Commit a23f4efc authored by Claus Jonathan Fritzemeier's avatar Claus Jonathan Fritzemeier
Browse files

forcing version 5.16 in configure script

parent 46769832
Package: sybilSBML Package: sybilSBML
Type: Package Type: Package
Title: SBML Integration in Package 'Sybil' Title: SBML Integration in Package 'Sybil'
Version: 3.0.3 Version: 3.0.4
Date: 2018-01-02 Date: 2018-02-19
Authors@R: c(person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"), Authors@R: c(person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person("Gabriel", "Gelius-Dietrich", role = c("aut", "ctb")), person("Gabriel", "Gelius-Dietrich", role = c("aut", "ctb")),
person("Deya", "Alzoubi", role = "ctb"), person("Deya", "Alzoubi", role = "ctb"),
...@@ -16,7 +16,7 @@ License: GPL-3 | file LICENSE ...@@ -16,7 +16,7 @@ License: GPL-3 | file LICENSE
LazyLoad: yes LazyLoad: yes
Collate: generics.R sbmlPtrClass.R sbmlErrorClass.R sybilSBML.R Collate: generics.R sbmlPtrClass.R sbmlErrorClass.R sybilSBML.R
uglyHack.R readSBMLmod.R zzz.R uglyHack.R readSBMLmod.R zzz.R
Packaged: 2018-01-02 07:11:55 UTC; jonathan Packaged: 2018-02-19 07:11:55 UTC; jonathan
Author: C. Jonathan Fritzemeier [cre, ctb], Author: C. Jonathan Fritzemeier [cre, ctb],
Gabriel Gelius-Dietrich [aut, ctb], Gabriel Gelius-Dietrich [aut, ctb],
Deya Alzoubi [ctb], Deya Alzoubi [ctb],
......
...@@ -3680,7 +3680,7 @@ fi ...@@ -3680,7 +3680,7 @@ fi
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], , #AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML: # AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.])) # make sure your libSBML version is >= 5.16.]))
for ac_func in SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound for ac_func in SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound
do : do :
...@@ -3693,24 +3693,24 @@ _ACEOF ...@@ -3693,24 +3693,24 @@ _ACEOF
else else
as_fn_error $? "Could not find specific FBC function of libSBML: as_fn_error $? "Could not find specific FBC function of libSBML:
make sure your libSBML version is >= 5.13 and including the FBC package." "$LINENO" 5 make sure your libSBML version is >= 5.16 and including the FBC package." "$LINENO" 5
fi fi
done done
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], , #AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML: # AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.])) # make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], , #AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML: # AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.])) # make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], , #AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML: # AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.])) # make sure your libSBML version is >= 5.16.]))
......
...@@ -252,25 +252,25 @@ AC_CHECK_HEADER([sbml/packages/groups/common/GroupsExtensionTypes.h], , ...@@ -252,25 +252,25 @@ AC_CHECK_HEADER([sbml/packages/groups/common/GroupsExtensionTypes.h], ,
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], , #AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML: # AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.])) # make sure your libSBML version is >= 5.16.]))
AC_CHECK_FUNCS([SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound], , AC_CHECK_FUNCS([SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound], ,
AC_MSG_ERROR([Could not find specific FBC function of libSBML: AC_MSG_ERROR([Could not find specific FBC function of libSBML:
make sure your libSBML version is >= 5.13 and including the FBC package.])) make sure your libSBML version is >= 5.16 and including the FBC package.]))
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], , #AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML: # AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.])) # make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], , #AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML: # AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.])) # make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], , #AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML: # AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.])) # make sure your libSBML version is >= 5.16.]))
......
...@@ -5,10 +5,10 @@ GNU R package sybilSBML: Link to libSBML for sybil ...@@ -5,10 +5,10 @@ GNU R package sybilSBML: Link to libSBML for sybil
# All Systems # All Systems
# ---------------------------------------------------------------------------- # # ---------------------------------------------------------------------------- #
First make sure you have installed libsbml >= 5.13 with the FBC and groups First make sure you have installed libsbml >= 5.16 with the FBC and groups
package. At http://sbml.org/Software/libSBML you can find installers for various package. At http://sbml.org/Software/libSBML you can find installers for various
plattforms and the source to compile by yourself. In this case download the file plattforms and the source to compile by yourself. In this case download the file
libSBML-5.13.0-core-plus-packages-src.* from their sourceforge page and use the libSBML-5.16.0-core-plus-packages-src.* from their sourceforge page and use the
configure options "--enable-fbc --enable-groups". configure options "--enable-fbc --enable-groups".
The installation procedure for the sybilSBML package needs to know where to The installation procedure for the sybilSBML package needs to know where to
......
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