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ccb
sybilSBML
Commits
a23f4efc
Commit
a23f4efc
authored
Feb 19, 2018
by
Claus Jonathan Fritzemeier
Browse files
forcing version 5.16 in configure script
parent
46769832
Changes
4
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DESCRIPTION
View file @
a23f4efc
Package: sybilSBML
Package: sybilSBML
Type: Package
Type: Package
Title: SBML Integration in Package 'Sybil'
Title: SBML Integration in Package 'Sybil'
Version: 3.0.
3
Version: 3.0.
4
Date: 2018-0
1-02
Date: 2018-0
2-19
Authors@R: c(person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
Authors@R: c(person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person("Gabriel", "Gelius-Dietrich", role = c("aut", "ctb")),
person("Gabriel", "Gelius-Dietrich", role = c("aut", "ctb")),
person("Deya", "Alzoubi", role = "ctb"),
person("Deya", "Alzoubi", role = "ctb"),
...
@@ -16,7 +16,7 @@ License: GPL-3 | file LICENSE
...
@@ -16,7 +16,7 @@ License: GPL-3 | file LICENSE
LazyLoad: yes
LazyLoad: yes
Collate: generics.R sbmlPtrClass.R sbmlErrorClass.R sybilSBML.R
Collate: generics.R sbmlPtrClass.R sbmlErrorClass.R sybilSBML.R
uglyHack.R readSBMLmod.R zzz.R
uglyHack.R readSBMLmod.R zzz.R
Packaged: 2018-0
1-02
07:11:55 UTC; jonathan
Packaged: 2018-0
2-19
07:11:55 UTC; jonathan
Author: C. Jonathan Fritzemeier [cre, ctb],
Author: C. Jonathan Fritzemeier [cre, ctb],
Gabriel Gelius-Dietrich [aut, ctb],
Gabriel Gelius-Dietrich [aut, ctb],
Deya Alzoubi [ctb],
Deya Alzoubi [ctb],
...
...
configure
View file @
a23f4efc
...
@@ -3680,7 +3680,7 @@ fi
...
@@ -3680,7 +3680,7 @@ fi
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.1
3
.]))
# make sure your libSBML version is >= 5.1
6
.]))
for
ac_func
in
SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound
for
ac_func
in
SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound
do
:
do
:
...
@@ -3693,24 +3693,24 @@ _ACEOF
...
@@ -3693,24 +3693,24 @@ _ACEOF
else
else
as_fn_error
$?
"Could not find specific FBC function of libSBML:
as_fn_error
$?
"Could not find specific FBC function of libSBML:
make sure your libSBML version is >= 5.1
3
and including the FBC package."
"
$LINENO
"
5
make sure your libSBML version is >= 5.1
6
and including the FBC package."
"
$LINENO
"
5
fi
fi
done
done
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.1
3
.]))
# make sure your libSBML version is >= 5.1
6
.]))
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.1
3
.]))
# make sure your libSBML version is >= 5.1
6
.]))
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.1
3
.]))
# make sure your libSBML version is >= 5.1
6
.]))
...
...
configure.ac
View file @
a23f4efc
...
@@ -252,25 +252,25 @@ AC_CHECK_HEADER([sbml/packages/groups/common/GroupsExtensionTypes.h], ,
...
@@ -252,25 +252,25 @@ AC_CHECK_HEADER([sbml/packages/groups/common/GroupsExtensionTypes.h], ,
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.1
3
.]))
# make sure your libSBML version is >= 5.1
6
.]))
AC_CHECK_FUNCS([SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound], ,
AC_CHECK_FUNCS([SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound], ,
AC_MSG_ERROR([Could not find specific FBC function of libSBML:
AC_MSG_ERROR([Could not find specific FBC function of libSBML:
make sure your libSBML version is >= 5.1
3
and including the FBC package.]))
make sure your libSBML version is >= 5.1
6
and including the FBC package.]))
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.1
3
.]))
# make sure your libSBML version is >= 5.1
6
.]))
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.1
3
.]))
# make sure your libSBML version is >= 5.1
6
.]))
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.1
3
.]))
# make sure your libSBML version is >= 5.1
6
.]))
...
...
inst/INSTALL
View file @
a23f4efc
...
@@ -5,10 +5,10 @@ GNU R package sybilSBML: Link to libSBML for sybil
...
@@ -5,10 +5,10 @@ GNU R package sybilSBML: Link to libSBML for sybil
# All Systems
# All Systems
# ---------------------------------------------------------------------------- #
# ---------------------------------------------------------------------------- #
First make sure you have installed libsbml >= 5.1
3
with the FBC and groups
First make sure you have installed libsbml >= 5.1
6
with the FBC and groups
package. At http://sbml.org/Software/libSBML you can find installers for various
package. At http://sbml.org/Software/libSBML you can find installers for various
plattforms and the source to compile by yourself. In this case download the file
plattforms and the source to compile by yourself. In this case download the file
libSBML-5.1
3
.0-core-plus-packages-src.* from their sourceforge page and use the
libSBML-5.1
6
.0-core-plus-packages-src.* from their sourceforge page and use the
configure options "--enable-fbc --enable-groups".
configure options "--enable-fbc --enable-groups".
The installation procedure for the sybilSBML package needs to know where to
The installation procedure for the sybilSBML package needs to know where to
...
...
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