From a23f4efccde6e210f8d0737f8502dd20ad25ba69 Mon Sep 17 00:00:00 2001
From: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@hhu.de>
Date: Mon, 19 Feb 2018 10:32:07 +0100
Subject: [PATCH] forcing version 5.16 in configure script
---
DESCRIPTION | 6 +++---
configure | 10 +++++-----
configure.ac | 10 +++++-----
inst/INSTALL | 4 ++--
4 files changed, 15 insertions(+), 15 deletions(-)
diff --git a/DESCRIPTION b/DESCRIPTION
index 1da96b0..d49bee9 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,8 +1,8 @@
Package: sybilSBML
Type: Package
Title: SBML Integration in Package 'Sybil'
-Version: 3.0.3
-Date: 2018-01-02
+Version: 3.0.4
+Date: 2018-02-19
Authors@R: c(person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person("Gabriel", "Gelius-Dietrich", role = c("aut", "ctb")),
person("Deya", "Alzoubi", role = "ctb"),
@@ -16,7 +16,7 @@ License: GPL-3 | file LICENSE
LazyLoad: yes
Collate: generics.R sbmlPtrClass.R sbmlErrorClass.R sybilSBML.R
uglyHack.R readSBMLmod.R zzz.R
-Packaged: 2018-01-02 07:11:55 UTC; jonathan
+Packaged: 2018-02-19 07:11:55 UTC; jonathan
Author: C. Jonathan Fritzemeier [cre, ctb],
Gabriel Gelius-Dietrich [aut, ctb],
Deya Alzoubi [ctb],
diff --git a/configure b/configure
index 05dc223..b70be29 100755
--- a/configure
+++ b/configure
@@ -3680,7 +3680,7 @@ fi
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
-# make sure your libSBML version is >= 5.13.]))
+# make sure your libSBML version is >= 5.16.]))
for ac_func in SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound
do :
@@ -3693,24 +3693,24 @@ _ACEOF
else
as_fn_error $? "Could not find specific FBC function of libSBML:
- make sure your libSBML version is >= 5.13 and including the FBC package." "$LINENO" 5
+ make sure your libSBML version is >= 5.16 and including the FBC package." "$LINENO" 5
fi
done
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
-# make sure your libSBML version is >= 5.13.]))
+# make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
-# make sure your libSBML version is >= 5.13.]))
+# make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
-# make sure your libSBML version is >= 5.13.]))
+# make sure your libSBML version is >= 5.16.]))
diff --git a/configure.ac b/configure.ac
index a74f142..226b21f 100644
--- a/configure.ac
+++ b/configure.ac
@@ -252,25 +252,25 @@ AC_CHECK_HEADER([sbml/packages/groups/common/GroupsExtensionTypes.h], ,
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
-# make sure your libSBML version is >= 5.13.]))
+# make sure your libSBML version is >= 5.16.]))
AC_CHECK_FUNCS([SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound], ,
AC_MSG_ERROR([Could not find specific FBC function of libSBML:
- make sure your libSBML version is >= 5.13 and including the FBC package.]))
+ make sure your libSBML version is >= 5.16 and including the FBC package.]))
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
-# make sure your libSBML version is >= 5.13.]))
+# make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
-# make sure your libSBML version is >= 5.13.]))
+# make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
-# make sure your libSBML version is >= 5.13.]))
+# make sure your libSBML version is >= 5.16.]))
diff --git a/inst/INSTALL b/inst/INSTALL
index f49bb56..6611c9d 100644
--- a/inst/INSTALL
+++ b/inst/INSTALL
@@ -5,10 +5,10 @@ GNU R package sybilSBML: Link to libSBML for sybil
# All Systems
# ---------------------------------------------------------------------------- #
-First make sure you have installed libsbml >= 5.13 with the FBC and groups
+First make sure you have installed libsbml >= 5.16 with the FBC and groups
package. At http://sbml.org/Software/libSBML you can find installers for various
plattforms and the source to compile by yourself. In this case download the file
-libSBML-5.13.0-core-plus-packages-src.* from their sourceforge page and use the
+libSBML-5.16.0-core-plus-packages-src.* from their sourceforge page and use the
configure options "--enable-fbc --enable-groups".
The installation procedure for the sybilSBML package needs to know where to
--
GitLab