diff --git a/DESCRIPTION b/DESCRIPTION index 1da96b0e5bc8823edfd52d50e0924dd635141810..d49bee94ae8aa75a5a9d1238e9612d319674ff82 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: sybilSBML Type: Package Title: SBML Integration in Package 'Sybil' -Version: 3.0.3 -Date: 2018-01-02 +Version: 3.0.4 +Date: 2018-02-19 Authors@R: c(person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"), person("Gabriel", "Gelius-Dietrich", role = c("aut", "ctb")), person("Deya", "Alzoubi", role = "ctb"), @@ -16,7 +16,7 @@ License: GPL-3 | file LICENSE LazyLoad: yes Collate: generics.R sbmlPtrClass.R sbmlErrorClass.R sybilSBML.R uglyHack.R readSBMLmod.R zzz.R -Packaged: 2018-01-02 07:11:55 UTC; jonathan +Packaged: 2018-02-19 07:11:55 UTC; jonathan Author: C. Jonathan Fritzemeier [cre, ctb], Gabriel Gelius-Dietrich [aut, ctb], Deya Alzoubi [ctb], diff --git a/configure b/configure index 05dc22301b6f554d695356621ec758d633349bcf..b70be290395ee35962a788af4a54c0107407af0a 100755 --- a/configure +++ b/configure @@ -3680,7 +3680,7 @@ fi #AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], , # AC_MSG_ERROR([Could not find specific FBC function of libSBML: -# make sure your libSBML version is >= 5.13.])) +# make sure your libSBML version is >= 5.16.])) for ac_func in SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound do : @@ -3693,24 +3693,24 @@ _ACEOF else as_fn_error $? "Could not find specific FBC function of libSBML: - make sure your libSBML version is >= 5.13 and including the FBC package." "$LINENO" 5 + make sure your libSBML version is >= 5.16 and including the FBC package." "$LINENO" 5 fi done #AC_SEARCH_LIBS([SBase_getPlugin], [sbml], , # AC_MSG_ERROR([Could not find specific FBC function of libSBML: -# make sure your libSBML version is >= 5.13.])) +# make sure your libSBML version is >= 5.16.])) #AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], , # AC_MSG_ERROR([Could not find specific FBC function of libSBML: -# make sure your libSBML version is >= 5.13.])) +# make sure your libSBML version is >= 5.16.])) #AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], , # AC_MSG_ERROR([Could not find specific FBC function of libSBML: -# make sure your libSBML version is >= 5.13.])) +# make sure your libSBML version is >= 5.16.])) diff --git a/configure.ac b/configure.ac index a74f142dd7d210135b5d958346898207ec7b563a..226b21f50a4d15f2e9d64017285fd88c3777c5cf 100644 --- a/configure.ac +++ b/configure.ac @@ -252,25 +252,25 @@ AC_CHECK_HEADER([sbml/packages/groups/common/GroupsExtensionTypes.h], , #AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], , # AC_MSG_ERROR([Could not find specific FBC function of libSBML: -# make sure your libSBML version is >= 5.13.])) +# make sure your libSBML version is >= 5.16.])) AC_CHECK_FUNCS([SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound], , AC_MSG_ERROR([Could not find specific FBC function of libSBML: - make sure your libSBML version is >= 5.13 and including the FBC package.])) + make sure your libSBML version is >= 5.16 and including the FBC package.])) #AC_SEARCH_LIBS([SBase_getPlugin], [sbml], , # AC_MSG_ERROR([Could not find specific FBC function of libSBML: -# make sure your libSBML version is >= 5.13.])) +# make sure your libSBML version is >= 5.16.])) #AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], , # AC_MSG_ERROR([Could not find specific FBC function of libSBML: -# make sure your libSBML version is >= 5.13.])) +# make sure your libSBML version is >= 5.16.])) #AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], , # AC_MSG_ERROR([Could not find specific FBC function of libSBML: -# make sure your libSBML version is >= 5.13.])) +# make sure your libSBML version is >= 5.16.])) diff --git a/inst/INSTALL b/inst/INSTALL index f49bb56832976b5ba708b74551b1119cecf6b97a..6611c9dc5c669ec9c889cd0c9e540709aa45d404 100644 --- a/inst/INSTALL +++ b/inst/INSTALL @@ -5,10 +5,10 @@ GNU R package sybilSBML: Link to libSBML for sybil # All Systems # ---------------------------------------------------------------------------- # -First make sure you have installed libsbml >= 5.13 with the FBC and groups +First make sure you have installed libsbml >= 5.16 with the FBC and groups package. At http://sbml.org/Software/libSBML you can find installers for various plattforms and the source to compile by yourself. In this case download the file -libSBML-5.13.0-core-plus-packages-src.* from their sourceforge page and use the +libSBML-5.16.0-core-plus-packages-src.* from their sourceforge page and use the configure options "--enable-fbc --enable-groups". The installation procedure for the sybilSBML package needs to know where to