Commit a23f4efc authored by Claus Jonathan Fritzemeier's avatar Claus Jonathan Fritzemeier
Browse files

forcing version 5.16 in configure script

parent 46769832
Package: sybilSBML
Type: Package
Title: SBML Integration in Package 'Sybil'
Version: 3.0.3
Date: 2018-01-02
Version: 3.0.4
Date: 2018-02-19
Authors@R: c(person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person("Gabriel", "Gelius-Dietrich", role = c("aut", "ctb")),
person("Deya", "Alzoubi", role = "ctb"),
......@@ -16,7 +16,7 @@ License: GPL-3 | file LICENSE
LazyLoad: yes
Collate: generics.R sbmlPtrClass.R sbmlErrorClass.R sybilSBML.R
uglyHack.R readSBMLmod.R zzz.R
Packaged: 2018-01-02 07:11:55 UTC; jonathan
Packaged: 2018-02-19 07:11:55 UTC; jonathan
Author: C. Jonathan Fritzemeier [cre, ctb],
Gabriel Gelius-Dietrich [aut, ctb],
Deya Alzoubi [ctb],
......
......@@ -3680,7 +3680,7 @@ fi
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.]))
# make sure your libSBML version is >= 5.16.]))
for ac_func in SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound
do :
......@@ -3693,24 +3693,24 @@ _ACEOF
else
as_fn_error $? "Could not find specific FBC function of libSBML:
make sure your libSBML version is >= 5.13 and including the FBC package." "$LINENO" 5
make sure your libSBML version is >= 5.16 and including the FBC package." "$LINENO" 5
fi
done
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.]))
# make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.]))
# make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.]))
# make sure your libSBML version is >= 5.16.]))
......
......@@ -252,25 +252,25 @@ AC_CHECK_HEADER([sbml/packages/groups/common/GroupsExtensionTypes.h], ,
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.]))
# make sure your libSBML version is >= 5.16.]))
AC_CHECK_FUNCS([SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound], ,
AC_MSG_ERROR([Could not find specific FBC function of libSBML:
make sure your libSBML version is >= 5.13 and including the FBC package.]))
make sure your libSBML version is >= 5.16 and including the FBC package.]))
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.]))
# make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([SBMLExtensionRegistry_getRegisteredPackages], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.]))
# make sure your libSBML version is >= 5.16.]))
#AC_SEARCH_LIBS([GeneProductAssociation_setAssociation], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
# make sure your libSBML version is >= 5.13.]))
# make sure your libSBML version is >= 5.16.]))
......
......@@ -5,10 +5,10 @@ GNU R package sybilSBML: Link to libSBML for sybil
# All Systems
# ---------------------------------------------------------------------------- #
First make sure you have installed libsbml >= 5.13 with the FBC and groups
First make sure you have installed libsbml >= 5.16 with the FBC and groups
package. At http://sbml.org/Software/libSBML you can find installers for various
plattforms and the source to compile by yourself. In this case download the file
libSBML-5.13.0-core-plus-packages-src.* from their sourceforge page and use the
libSBML-5.16.0-core-plus-packages-src.* from their sourceforge page and use the
configure options "--enable-fbc --enable-groups".
The installation procedure for the sybilSBML package needs to know where to
......
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