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TBA

A Java-based Jupyter kernel for ProB 2

ProB Modelling Examples as Jupyter Notebooks.

Reduce a metabolic network (SBML fbc coded model) as per Network Reducer method implemented in MATLAB tool CellNetAnalzyser.

Description: Python package sbmlxdf. Converts between SBML (.xml) and Pandas dataframes, Excel spreadsheets (.xlsx), *.csv. SBML model creation, modification, validation and access.

R Interface to C API of IBM ILOG CPLEX, depends on IBM ILOG CPLEX (>= 12.1)

R Interface to C API of GLPK, needs GLPK Version >= 4.42

R Interface to C API of COIN-OR Clp, depends on COIN-OR Clp Version >= 1.12.0

A Cytoscape 3.6 application that wraps the Yoshiko-Algorithm implementation as provided @:https://github.com/ls-cwi/yoshiko.git

Public Jupyter teaching notebooks for use with the ProB kernel for Jupyter.

Public codebase for "LAVA: Latent Action Spaces via Variational Auto-encoding for Dialogue Policy Optimization" published in COLING 2020.