Basic work on implementing visual representation of solution

Some more components representing parameters

Implemented basic configuration system
Saves previously stored yoshiko library location

dummy classes for referencing object pointers

Converted back to "raw" maven as osgi plugin in gradle is not really working as intended and cytoscape strongly suggests using their maven archetype (future versions will drop support for other solutions)

Seperate Compilation of C++/Java code for now

One-Click fetch and compile of yoshiko code with gradle implemented (as of now, assumes the user has gcc/git installed)

Beginning to write a gradle script that fetches git data (and hopefully compiles it eventually/ resolves all dependencies)