preparing for time limit and generic argument passing

src/main/java/de/hhu/ba/yoshikoWrapper/core/Core.java

 package de.hhu.ba.yoshikoWrapper.core;
-
-import java.util.HashMap;
-
 //TODO: ADD LOGGER SYSTEM
 
 import org.cytoscape.application.CyApplicationManager;
@@ -21,12 +18,14 @@ public class Core {
 		cy = cyApplicationManager;
 	}
 
-	public static void performYoshiko() {
+	public static void performYoshiko(int timeLimit) {
 		CyNetwork currentNetwork = cy.getCurrentNetwork();
 		if (currentNetwork == null) {
 			//TODO
 		}
 		
+		LibraryInterface.setTimeLimit(timeLimit);
+		
 		NodeMap nodeMap  = new NodeMap(currentNetwork);
 
 		SWIGTYPE_p_yskInput__LibraryInput input = NetworkParser.parseNetwork(currentNetwork,nodeMap);

src/main/java/de/hhu/ba/yoshikoWrapper/gui/MainPanel.java

@@ -3,26 +3,19 @@ package de.hhu.ba.yoshikoWrapper.gui;
 import java.awt.Component;
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
-import java.util.HashMap;
 
+import javax.swing.BoxLayout;
 import javax.swing.Icon;
 import javax.swing.JButton;
 import javax.swing.JFileChooser;
 import javax.swing.JLabel;
-import javax.swing.JOptionPane;
 import javax.swing.JPanel;
 import org.cytoscape.application.swing.CytoPanelComponent;
 import org.cytoscape.application.swing.CytoPanelName;
-import org.cytoscape.model.CyNode;
-
 import de.hhu.ba.yoshikoWrapper.core.Core;
-import de.hhu.ba.yoshikoWrapper.core.NetworkParser;
-import de.hhu.ba.yoshikoWrapper.core.NodeMap;
 import de.hhu.ba.yoshikoWrapper.core.YoshikoLoader;
-import de.hhu.ba.yoshikoWrapper.gui.TimeLimitSetter;
+import de.hhu.ba.yoshikoWrapper.gui.*;
 import de.hhu.ba.yoshikoWrapper.swig.LibraryInterface;
-import de.hhu.ba.yoshikoWrapper.swig.SWIGTYPE_p_yskInput__LibraryInput;
-import de.hhu.ba.yoshikoWrapper.swig.SWIGTYPE_p_ysk__ClusterEditingSolutions;
 
 /**This class describes the Swing Panel that the user interacts with in cytoscape
  * @author Philipp Spohr, Aug 6, 2017
@@ -50,6 +43,8 @@ public class MainPanel extends JPanel implements CytoPanelComponent {
 	 */
 	public MainPanel() {
 		
+		
+		this.setLayout(new BoxLayout(this,BoxLayout.PAGE_AXIS));
 		//SWING COMPONENT INITIALIZATION
 		
 		libStatusPanel = new LibStatusPanel();
@@ -83,7 +78,7 @@ public class MainPanel extends JPanel implements CytoPanelComponent {
 			@Override
 			public void actionPerformed(ActionEvent e) {
 				if (yoshikoLoader.isLibraryLoaded()){
-					Core.performYoshiko();
+					Core.performYoshiko(timeLimitSetter.getTimeLimit());
 
 				}
 			}

src/main/java/de/hhu/ba/yoshikoWrapper/gui/NumberInputField.java

@@ -20,4 +20,7 @@ public class NumberInputField extends JFormattedTextField{
 		super(FormatHelper.getIntegerFormatter());
 	}
 
+	public int getTimeLimit() {
+		return Integer.parseInt(getText());
+	}
 }

src/main/java/de/hhu/ba/yoshikoWrapper/gui/TimeLimitSetter.java

@@ -20,6 +20,7 @@ public class TimeLimitSetter extends JPanel{
 		checkBox = new JCheckBox();
 		numberField = new NumberInputField();
 		numberField.setEnabled(false); //By default time limit is turned off
+		numberField.setSize(40, 10);
 		checkBox.addActionListener(
 				new ActionListener() {
 
@@ -39,7 +40,7 @@ public class TimeLimitSetter extends JPanel{
 		if (checkBox.isSelected()) {
 			return -1;
 		}
-		return (int)numberField.getValue();
+		return numberField.getTimeLimit();
 	}
 
 }