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Commit e40e7845 authored by Sara Schulte's avatar Sara Schulte
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Update mhc2 example argument

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HOGVAX/example_arguments.txt
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python hogvax.py --k 170 --outdir mhcI_unlinked --populations World --peptides ../OptiVax_Data/Peptides/optivax_unlinked_mhc1_4512_filtered_peptides.pep --allele-frequencies ../OptiVax_Data/Frequencies/IEDB_population_frequency2392_normalized.pkl --ba-threshold 0.638 --binding-affinities ../OptiVax_Data/BindingAffinities/25June_mhc1_netmhc-4.1_pred_affinity_pivot.pkl.gz --min-hits 1 --verbose 1
python hogvax.py --k 322 --outdir mhcII_unlinked --population World --peptides ../../OptiVax_Data/Peptides/optivax_unlinked_mhc2_37435_filtered_peptides.pep -af ../../OptiVax_Data/Frequencies/IEDB_population_frequency_mhc2_275normalized.pkl -t 0.638 -ba ../../OptiVax_Data/BindingAffinities/25June_mhc2_netmhcii-4.1_pred_affinity_pivot_v1v2.pkl.gz --min-hits 1 --verbose 1
python hogvax.py --k 322 --outdir mhcII_unlinked --population World --peptides ../OptiVax_Data/Peptides/optivax_unlinked_mhc2_37435_filtered_peptides.pep -af ../OptiVax_Data/Frequencies/IEDB_population_frequency_mhc2_275normalized.pkl -t 0.638 -ba ../OptiVax_Data/BindingAffinities/25June_mhc2_netmhcii-4.1_pred_affinity_pivot_v1v2.pkl.gz --min-hits 1 --verbose 1
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