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Commit b291fa51 authored by Sara Schulte's avatar Sara Schulte
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Fix parameter input

parent 17d6c871
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...@@ -32,8 +32,8 @@ def get_parser(): ...@@ -32,8 +32,8 @@ def get_parser():
help='File of peptides you want to be present in vaccine') help='File of peptides you want to be present in vaccine')
parser.add_argument('--min-hits', '-mh', dest='min_hits', default=1, type=int, parser.add_argument('--min-hits', '-mh', dest='min_hits', default=1, type=int,
help='Minimum number of hits for an allele to be covered') help='Minimum number of hits for an allele to be covered')
parser.add_argument('--maximize-peptides', dest='maximize_peptides', default=False, parser.add_argument('--maximize-peptides', dest='maximize_peptides', action='store_const', const=True,
help='Maximize number of peptides in the vaccine in a second optimization') default=False, help='Maximize number of peptides in the vaccine in a second optimization')
parser.add_argument('--embedding-length', default=0, type=int, help='Set length of embedding if used') parser.add_argument('--embedding-length', default=0, type=int, help='Set length of embedding if used')
parser.add_argument('--embedded-peptides', type=str, help='File containing embedded peptides') parser.add_argument('--embedded-peptides', type=str, help='File containing embedded peptides')
parser.add_argument('--embedded-epitope_features', type=str, help='Path to embedded epitope features') parser.add_argument('--embedded-epitope_features', type=str, help='Path to embedded epitope features')
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