Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
HOGVAX
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Requirements
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Package registry
Container registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Sara Schulte
HOGVAX
Commits
b291fa51
Commit
b291fa51
authored
2 years ago
by
Sara Schulte
Browse files
Options
Downloads
Patches
Plain Diff
Fix parameter input
parent
17d6c871
Branches
Branches containing commit
Tags
Tags containing commit
No related merge requests found
Changes
1
Show whitespace changes
Inline
Side-by-side
Showing
1 changed file
HOGVAX/hogvax.py
+2
-2
2 additions, 2 deletions
HOGVAX/hogvax.py
with
2 additions
and
2 deletions
HOGVAX/hogvax.py
+
2
−
2
View file @
b291fa51
...
@@ -32,8 +32,8 @@ def get_parser():
...
@@ -32,8 +32,8 @@ def get_parser():
help
=
'
File of peptides you want to be present in vaccine
'
)
help
=
'
File of peptides you want to be present in vaccine
'
)
parser
.
add_argument
(
'
--min-hits
'
,
'
-mh
'
,
dest
=
'
min_hits
'
,
default
=
1
,
type
=
int
,
parser
.
add_argument
(
'
--min-hits
'
,
'
-mh
'
,
dest
=
'
min_hits
'
,
default
=
1
,
type
=
int
,
help
=
'
Minimum number of hits for an allele to be covered
'
)
help
=
'
Minimum number of hits for an allele to be covered
'
)
parser
.
add_argument
(
'
--maximize-peptides
'
,
dest
=
'
maximize_peptides
'
,
default
=
Fals
e
,
parser
.
add_argument
(
'
--maximize-peptides
'
,
dest
=
'
maximize_peptides
'
,
action
=
'
store_const
'
,
const
=
Tru
e
,
help
=
'
Maximize number of peptides in the vaccine in a second optimization
'
)
default
=
False
,
help
=
'
Maximize number of peptides in the vaccine in a second optimization
'
)
parser
.
add_argument
(
'
--embedding-length
'
,
default
=
0
,
type
=
int
,
help
=
'
Set length of embedding if used
'
)
parser
.
add_argument
(
'
--embedding-length
'
,
default
=
0
,
type
=
int
,
help
=
'
Set length of embedding if used
'
)
parser
.
add_argument
(
'
--embedded-peptides
'
,
type
=
str
,
help
=
'
File containing embedded peptides
'
)
parser
.
add_argument
(
'
--embedded-peptides
'
,
type
=
str
,
help
=
'
File containing embedded peptides
'
)
parser
.
add_argument
(
'
--embedded-epitope_features
'
,
type
=
str
,
help
=
'
Path to embedded epitope features
'
)
parser
.
add_argument
(
'
--embedded-epitope_features
'
,
type
=
str
,
help
=
'
Path to embedded epitope features
'
)
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment