From b291fa5131be94e7f09c221b07db3e77aa018b65 Mon Sep 17 00:00:00 2001
From: Sara <sara.schulte@uni-duesseldorf.de>
Date: Mon, 27 Mar 2023 18:14:01 +0200
Subject: [PATCH] Fix parameter input
---
HOGVAX/hogvax.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/HOGVAX/hogvax.py b/HOGVAX/hogvax.py
index fc8e613..3e59e4a 100644
--- a/HOGVAX/hogvax.py
+++ b/HOGVAX/hogvax.py
@@ -32,8 +32,8 @@ def get_parser():
help='File of peptides you want to be present in vaccine')
parser.add_argument('--min-hits', '-mh', dest='min_hits', default=1, type=int,
help='Minimum number of hits for an allele to be covered')
- parser.add_argument('--maximize-peptides', dest='maximize_peptides', default=False,
- help='Maximize number of peptides in the vaccine in a second optimization')
+ parser.add_argument('--maximize-peptides', dest='maximize_peptides', action='store_const', const=True,
+ default=False, help='Maximize number of peptides in the vaccine in a second optimization')
parser.add_argument('--embedding-length', default=0, type=int, help='Set length of embedding if used')
parser.add_argument('--embedded-peptides', type=str, help='File containing embedded peptides')
parser.add_argument('--embedded-epitope_features', type=str, help='Path to embedded epitope features')
--
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