protein syntheses reaction allow sboterm 589 and 205 for now.

xbanalysis/model/xba_reaction.py

@@ -65,7 +65,7 @@ class XbaReaction:
         #     to species being consumed add the enzyme product with corresponding stoichiometry
         #     to species being produced add the enzyme product with corresponding stoichiometry, unless
         #        the species is itself the enzyme product, in which case we add the ps reaction producing it.
-        if self.sboterm == 'SBO:0000589':
+        if (self.sboterm == 'SBO:0000589') or (self.sboterm == 'SBO:0000205') :
             enz_sid = ''
             for sid in self.products:
                 if (species[sid].sboterm == 'SBO:0000252') or (species[sid].sboterm == 'SBO:0000250'):

xbanalysis/problems/gba_problem.py

@@ -41,7 +41,8 @@ class GbaProblem:
                         if ((r.sboterm == 'SBO:0000167') or
                             (r.sboterm == 'SBO:0000179') or
                             (r.sboterm == 'SBO:0000182'))]
-        self.ps_rids = [r.id for r in xba_model.reactions.values() if r.sboterm == 'SBO:0000589']
+        self.ps_rids = [r.id for r in xba_model.reactions.values()
+                        if (r.sboterm == 'SBO:0000589') or (r.sboterm == 'SBO:0000205')]
         spont_rids = [rid for rid in self.mr_rids if xba_model.reactions[rid].enzyme == '']
 
         # calculate stoichiometric for mass balance equality constraints