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Commit 14a2a500 authored by Laura Christine Kühle's avatar Laura Christine Kühle
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Removed completed TODOs.

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......@@ -4,7 +4,6 @@
TODO: Improve '_generate_cell_data'
TODO: Extract normalization (Combine smooth and troubled before normalizing)
TODO: Discontinue data splitting -> Done
TODO: Improve verbose output
"""
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......@@ -2,20 +2,13 @@
"""
@author: Laura C. Kühle, Soraya Terrab (sorayaterrab)
TODO: Improve 'epoch_training()' -> Done
TODO: Add ANN classification from Soraya
TODO: Improve naming of training data/model (maybe different folders?; split training data later;
total amount + percentage?) -> Done
TODO: Give option to compare multiple models
TODO: Use sklearn for classification
TODO: Fix difference between accuracies (stems from rounding; choose higher value instead)
TODO: Add more evaluation measures (AUROC, ROC, F1, training accuracy, etc.)
TODO: Decide on k-fold cross-validation (Use? Which model do we keep?)
TODO: Fix bug in valid_loss calculation -> Done
TODO: Replace multi-file set-up for training data -> Done
TODO: Rework model testing
TODO: Limit batch size with regard to training data -> Done
TODO: Build Snakemake pipeline for model training -> Done
TODO: Clean up directories/naming
TODO: Add log to pipeline
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