diff --git a/ANN_Data_Generator.py b/ANN_Data_Generator.py index 5b476f125c524d2b3aa0399a817b55daa5fb7d08..8aff0057111d7b5b445187b3876a3ec564343637 100644 --- a/ANN_Data_Generator.py +++ b/ANN_Data_Generator.py @@ -4,7 +4,6 @@ TODO: Improve '_generate_cell_data' TODO: Extract normalization (Combine smooth and troubled before normalizing) -TODO: Discontinue data splitting -> Done TODO: Improve verbose output """ diff --git a/ANN_Training.py b/ANN_Training.py index 17de35092ab485c887f433b23b33cffe7393f8fd..dccd8b1dcce91c5e3bf2f967b361a3d0d2b2363e 100644 --- a/ANN_Training.py +++ b/ANN_Training.py @@ -2,20 +2,13 @@ """ @author: Laura C. Kühle, Soraya Terrab (sorayaterrab) -TODO: Improve 'epoch_training()' -> Done TODO: Add ANN classification from Soraya -TODO: Improve naming of training data/model (maybe different folders?; split training data later; - total amount + percentage?) -> Done TODO: Give option to compare multiple models TODO: Use sklearn for classification TODO: Fix difference between accuracies (stems from rounding; choose higher value instead) TODO: Add more evaluation measures (AUROC, ROC, F1, training accuracy, etc.) TODO: Decide on k-fold cross-validation (Use? Which model do we keep?) -TODO: Fix bug in valid_loss calculation -> Done -TODO: Replace multi-file set-up for training data -> Done TODO: Rework model testing -TODO: Limit batch size with regard to training data -> Done -TODO: Build Snakemake pipeline for model training -> Done TODO: Clean up directories/naming TODO: Add log to pipeline