Commit 4f3015c4 authored by Claus Jonathan Fritzemeier's avatar Claus Jonathan Fritzemeier
Browse files

maintainer switch and new gpr format

parent a1717cb4
Package: sybilSBML
Type: Package
Title: SBML Integration in Package Sybil
Version: 2.0.9
Date: 2015-07-03
Title: SBML Integration in Package 'Sybil'
Version: 2.0.11
Date: 2016-06-06
Authors@R: c(person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person("Gabriel", "Gelius-Dietrich", role = c("aut")),
person("Gabriel", "Gelius-Dietrich", role = c("aut", "ctb")),
person("Deya", "Alzoubi", role = "ctb"))
Maintainer: Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
Depends: R (>= 2.14.2), Matrix, sybil (>= 1.2.4)
Maintainer: C. Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
Depends: R (>= 2.14.2), Matrix, sybil (>= 2.0.0)
Imports: methods
Description: SBML (Systems Biology Markup Language) integration in sybil. Many constraint based metabolic models are published in SBML format (*.xml). Herewith is the ability to read and check SBML files in sybil provided.
Description: 'SBML' (Systems Biology Markup Language) integration in 'sybil'. Many constraint based metabolic models are published in 'SBML' format ('*.xml'). Herewith is the ability to read and check 'SBML' files in 'sybil' provided.
License: GPL-3 | file LICENSE
LazyLoad: yes
Collate: generics.R sbmlPtrClass.R sbmlErrorClass.R sybilSBML.R
uglyHack.R readSBMLmod.R zzz.R
Packaged: 2014-05-21 07:11:55 UTC; gabriel
Packaged: 2015-06-06 07:11:55 UTC; jonathan
Author: C. Jonathan Fritzemeier [cre, ctb],
Gabriel Gelius-Dietrich [aut],
Gabriel Gelius-Dietrich [aut, ctb],
Deya Alzoubi [ctb]
NeedsCompilation: yes
Repository: CRAN
......@@ -897,13 +897,14 @@ else {
if ( (length(genes[[i]] == 1)) && (genes[[i]] != "") ) {
geneInd <- match(genes[[i]], allGenes)
rxnGeneMat[i, geneInd] <- TRUE
for (j in 1 : length(geneInd)) {
pat <- paste("x(", j, ")", sep = "")
repl <- paste("x[", geneInd[j], "]", sep = "")
rules[i] <- gsub(pat, repl, rules[i], fixed = TRUE)
}
# no use because new gprRule format
# for (j in 1 : length(geneInd)) {
# pat <- paste("x(", j, ")", sep = "")
# repl <- paste("x[", geneInd[j], "]", sep = "")
#
# rules[i] <- gsub(pat, repl, rules[i], fixed = TRUE)
# }
}
}
......
......@@ -6,6 +6,14 @@
\newcommand{\CRANpkg}{\href{http://CRAN.R-project.org/package=#1}{\pkg{#1}}}
% ---------------------------------------------------------------------------- %
\section{Changes in version 2.0.11 2015-07-03}{
\itemize{
\item \code{gprRules}-Slot in \code{modelorg} has changed. Thus
\code{readSBMLmod} had to be updated.
}
}
% ---------------------------------------------------------------------------- %
\section{Changes in version 2.0.9 2015-07-03}{
\itemize{
......
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