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general
ccb
sybil
Commits
2858972d
Commit
2858972d
authored
9 years ago
by
Claus Jonathan Fritzemeier
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bug in addreact with modelorg_irrev
parent
17091871
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DESCRIPTION
+1
-1
1 addition, 1 deletion
DESCRIPTION
R/addReact.R
+1
-1
1 addition, 1 deletion
R/addReact.R
inst/NEWS.Rd
+8
-0
8 additions, 0 deletions
inst/NEWS.Rd
with
10 additions
and
2 deletions
DESCRIPTION
+
1
−
1
View file @
2858972d
Package: sybil
Package: sybil
Type: Package
Type: Package
Title: Efficient Constrained Based Modelling in R
Title: Efficient Constrained Based Modelling in R
Version: 1.3.
2
Version: 1.3.
3
Date: 2015-11-16
Date: 2015-11-16
Authors@R: c(
Authors@R: c(
person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
...
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R/addReact.R
+
1
−
1
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2858972d
...
@@ -317,7 +317,7 @@ addReact <- function(model,
...
@@ -317,7 +317,7 @@ addReact <- function(model,
if
(
is
(
model
,
"modelorg_irrev"
))
{
if
(
is
(
model
,
"modelorg_irrev"
))
{
mod_out
<-
modelorg_irrev
(
mod_id
(
model
),
mod_name
(
model
))
mod_out
<-
modelorg_irrev
(
mod_id
(
model
),
mod_name
(
model
))
irrev
(
mod_out
)
<-
TRUE
irrev
(
mod_out
)
<-
TRUE
matchrev
(
mod_out
)
<-
append
(
matchrev
(
model
),
0
)
matchrev
(
mod_out
)
<-
append
(
matchrev
(
model
),
0
L
)
revReactId
<-
max
(
irrev2rev
(
model
))
+1
revReactId
<-
max
(
irrev2rev
(
model
))
+1
irrev2rev
(
mod_out
)
<-
append
(
irrev2rev
(
model
),
revReactId
)
irrev2rev
(
mod_out
)
<-
append
(
irrev2rev
(
model
),
revReactId
)
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inst/NEWS.Rd
+
8
−
0
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2858972d
...
@@ -6,6 +6,12 @@
...
@@ -6,6 +6,12 @@
\newcommand{\CRANpkg}{\href{http://CRAN.R-project.org/package=#1}{\pkg{#1}}}
\newcommand{\CRANpkg}{\href{http://CRAN.R-project.org/package=#1}{\pkg{#1}}}
\section{Changes in version 1.3.3 2015-11-25}{
\itemize{
\item \code{addReact} crashed for irreversible models.
}
}
% ---------------------------------------------------------------------------- %
\section{Changes in version 1.3.2 2015-10-21}{
\section{Changes in version 1.3.2 2015-10-21}{
\itemize{
\itemize{
\item New Algorithm \code{fbaEasyConstraint} and \code{mtfEasyConstraint}
\item New Algorithm \code{fbaEasyConstraint} and \code{mtfEasyConstraint}
...
@@ -14,6 +20,7 @@
...
@@ -14,6 +20,7 @@
\item \code{switch} needs the first parameter explicitly named.
\item \code{switch} needs the first parameter explicitly named.
}
}
}
}
% ---------------------------------------------------------------------------- %
\section{Changes in version 1.3.1 2015-10-02}{
\section{Changes in version 1.3.1 2015-10-02}{
\itemize{
\itemize{
...
@@ -21,6 +28,7 @@
...
@@ -21,6 +28,7 @@
\item \code{deadEndMetabolite()} could miss deadEndMetabolites if reactions differ in stoichiometry e.g. 1 and 2.
\item \code{deadEndMetabolite()} could miss deadEndMetabolites if reactions differ in stoichiometry e.g. 1 and 2.
}
}
}
}
% ---------------------------------------------------------------------------- %
\section{Changes in version 1.3.1 2015-08-06}{
\section{Changes in version 1.3.1 2015-08-06}{
\itemize{
\itemize{
...
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