CyActivator.java

package de.hhu.ba.yoshikoWrapper;

import java.util.Properties;

import org.cytoscape.application.CyApplicationManager;
import org.cytoscape.application.swing.CyAction;
import org.cytoscape.application.swing.CySwingApplication;
import org.cytoscape.application.swing.CytoPanelComponent;
import org.cytoscape.service.util.AbstractCyActivator;
import org.osgi.framework.BundleContext;

import de.hhu.ba.yoshikoWrapper.core.ConfigurationManager;
import de.hhu.ba.yoshikoWrapper.core.Core;
import de.hhu.ba.yoshikoWrapper.core.YoshikoLoader;
import de.hhu.ba.yoshikoWrapper.gui.MainPanel;
import de.hhu.ba.yoshikoWrapper.gui.MainPanelAction;
import de.hhu.ba.yoshikoWrapper.gui.SolutionsPanel;


public class CyActivator extends AbstractCyActivator {
	
	public CyActivator() {
		super();
	}
		
	@Override
	public void start(BundleContext context) throws Exception {
		//Initialize cytoscape configuration system
		ConfigurationManager cm = new ConfigurationManager("yoshikoWrapper", "yoshiko.props");
		Properties propsReaderServiceProps = new Properties();
		propsReaderServiceProps.setProperty("cyPropertyName", "yoshiko.props");
		registerAllServices(context,cm,propsReaderServiceProps);


		//Attempt to find the yoshiko lib in r a previously stored location
		YoshikoLoader.provideConfiguration(cm);
		if (!YoshikoLoader.isLibraryLoaded()){
			YoshikoLoader.loadLibrary(cm.getProperties().getProperty("pathToYoshiko"));
		}
		
		CyApplicationManager cyApplicationManager = getService(context, CyApplicationManager.class);
		Core.setApplicationManager(cyApplicationManager);
		
		CySwingApplication cytoscapeDesktopService = getService(context,CySwingApplication.class);
		
		//main panel and result panel
		MainPanel mainPanel = new MainPanel();
		SolutionsPanel solutionsPanel = new SolutionsPanel();
		registerService(context,mainPanel,CytoPanelComponent.class, new Properties());
		registerService(context,solutionsPanel,CytoPanelComponent.class, new Properties());
	}

}