Sorted TODOs.

DG_Approximation.py

@@ -21,46 +21,47 @@ TODO: Discuss descriptions (matrices, cfl number, right-hand side,
 TODO: Discuss referencing info on SSPRK3
 
 Urgent:
-TODO: Induce shift in IC class
-TODO: Move plot_approximation_results() into plotting script
-TODO: Improve file naming (e.g. use '.' instead of '__')
-TODO: Check whether ghost cells are handled/set correctly
-TODO: Enforce even number of ghost cells on each side on fine mesh (?)
+TODO: Improve file naming (e.g. use '.' instead of '__') -> Done
 TODO: Unify use of 'length' and 'len' in naming
 TODO: Unify use of 'initial_condition' and 'init_cond' in naming
 TODO: Unify use of 'mesh' and 'grid' in naming
 TODO: Check sign change in stiffness matrix to accommodate negative wave speed
-TODO: Check whether 'projection' is always a ndarray
 TODO: Force input_size for each ANN model to be stencil length
+TODO: Induce shift in IC class
 TODO: Unify print commands (f vs no f)
 TODO: Add method and error info to Mesh
 TODO: Add use of discontinuity position to all ICs
-TODO: Adjust definitions of each IC to be dependent on domain
 TODO: Change maximum training degree to 6
 TODO: Change minimum training mesh size to 2^5
 TODO: Enforce shift to be positive for two-sided Heaviside
 TODO: Remove option to choose training domain
 TODO: Fix VisibleDeprecationWarning for ndarray encoding
-
-Critical, but not urgent:
+TODO: Give option to select plotting color
+TODO: Move scripts into separate directory
+TODO: Outsource run commands in SM rules into separate files
+TODO: Move plot_approximation_results() into plotting script
 TODO: Introduce env files for each SM rule
+TODO: Restructure directories
 TODO: Add images to report
 TODO: Add verbose output
-TODO: Outsource scripts into separate directory
-TODO: Check whether all instance variables are sensible
-TODO: Combine ANN workflows if feasible
-TODO: Investigate profiling for speed up
+
+Critical, but not urgent:
 TODO: Rework Theoretical TC for efficiency
 TODO: Extract object initialization from DGScheme
 TODO: Replace loops with list comprehension if feasible
 TODO: Replace loops/list comprehension with vectorization if feasible
+TODO: Check whether 'projection' is always a ndarray
+TODO: Check whether ghost cells are handled/set correctly
+TODO: Enforce even number of ghost cells on each side on fine mesh (?)
+TODO: Check whether all instance variables are sensible
+TODO: Investigate g-mesh(?)
+TODO: Create g-mesh with Mesh class
+TODO: Combine ANN workflows if feasible
+TODO: Investigate profiling for speed up
 
 Currently not critical:
-TODO: Give option to select plotting color
 TODO: Add an environment file for Snakemake
 TODO: Build package (module?) for DG scheme
-TODO: Investigate g-mesh(?)
-TODO: Create g-mesh with Mesh class
 TODO: Rename files according to standard
 TODO: Allow comparison between ANN training datasets
 TODO: Use full path for ANN model state
@@ -68,6 +69,7 @@ TODO: Add a default model state
 TODO: Look into validators for variable checks
 
 Not feasible yet or doc-related:
+TODO: Adjust definitions of each IC to be dependent on domain
 TODO: Add README for ANN training
 TODO: Give detailed description of wavelet detection
 TODO: Use cfl_number for updating, not just time (equation-related?)