Removed completed TODOs.

Snakefile

@@ -23,14 +23,6 @@ TODO: Contemplate allowing vector input for ICs
 TODO: Discuss how wavelet details should be plotted
 
 Urgent:
-TODO: Refactor Boxplot class -> Done
-TODO: Enforce periodic boundary condition for projection with decorator -> Done
-TODO: Enforce Boxplot bounds with decorator -> Done
-TODO: Enforce Boxplot folds with decorator -> Done
-TODO: Enforce boundary for initial condition in exact solution only -> Done
-TODO: Adapt number of ghost cells based on ANN stencil -> Done
-TODO: Ensure exact solution is calculated in Equation class -> Done
-TODO: Enforce num_ghost_cells to be positive integer for DG -> Done
 TODO: Add Burger class
 TODO: Use cfl_number for updating, not just time (equation-related?)
 
@@ -40,6 +32,7 @@ TODO: Make sure that the cell indices are the same over all TCDs
 TODO: Combine ANN workflows if feasible
 TODO: Check whether all instance variables are sensible
 TODO: Check whether all ValueError are set (correctly)
+TODO: Update SM to newest version for better report style
 TODO: Introduce env files for each SM rule
 TODO: Add an environment file for Snakemake
 TODO: Rename files according to standard
@@ -78,6 +71,7 @@ TODO: Check whether documentation style is correct
 TODO: Check whether all types in doc are correct
 TODO: Add type annotations to function heads
 TODO: Clean up docstrings
+TODO: Format repo according to SM standard
 TODO: Investigate profiling for speed up
 
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