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networkComplexityBigg/Data/modelTable.csv

+"","X","organism","bigg_id","gene_count","metabolite_count","reaction_count","isEco55","taxid","pubMedId","year"
+"1",1,"Acinetobacter baumannii AYE","iCN718",709,888,1015,FALSE,509173,"29692801",2018
+"2",2,"Bacillus subtilis subsp. subtilis str. 168","iYO844",844,991,1250,FALSE,224308,"17573341",2007
+"3",3,"Buchnera aphidicola str. APS","iSM199",199,298,297,FALSE,NA,"22513857",2012
+"4",4,"Chlamydomonas","iRC1080",1086,1706,2191,FALSE,3052,"21811229",2011
+"5",5,"Clostridioides difficile 630","iCN900",900,885,1229,FALSE,272563,"",2020
+"6",6,"Clostridium ljungdahlii DSM 13528","iHN637",637,698,785,FALSE,748727,"24274140",2013
+"7",7,"Escherichia coli 042","iEC042_1314",1314,1926,2715,TRUE,216592,"24277855",2013
+"8",8,"Escherichia coli 536","iECP_1309",1309,1943,2740,TRUE,362663,"24277855",2013
+"9",9,"Escherichia coli 55989","iEC55989_1330",1330,1953,2757,TRUE,585055,"24277855",2013
+"10",10,"Escherichia coli ABU 83972","iECABU_c1320",1320,1944,2732,TRUE,655817,"24277855",2013
+"11",11,"Escherichia coli APEC O1","iAPECO1_1312",1313,1944,2736,TRUE,405955,"24277855",2013
+"12",12,"Escherichia coli ATCC 8739","iEC1349_Crooks",1349,1946,2756,TRUE,481805,"27667363",2016
+"13",14,"Escherichia coli ATCC 8739","iEcolC_1368",1368,1971,2769,TRUE,481805,"24277855",2013
+"14",16,"Escherichia coli B str. REL606","iECB_1328",1329,1953,2749,TRUE,413997,"24277855",2013
+"15",17,"Escherichia coli BL21-Gold(DE3)pLysS AG","iECBD_1354",1354,1954,2749,TRUE,866768,"24277855",2013
+"16",18,"Escherichia coli BL21(DE3)","iB21_1397",1337,1945,2742,TRUE,469008,"24277855",2013
+"17",21,"Escherichia coli BL21(DE3)","iEC1356_Bl21DE3",1356,1918,2740,TRUE,469008,"27667363",2016
+"18",24,"Escherichia coli BL21(DE3)","iECD_1391",1333,1945,2742,TRUE,469008,"24277855",2013
+"19",27,"Escherichia coli BW2952","iBWG_1329",1328,1949,2742,TRUE,595496,"24277855",2013
+"20",28,"Escherichia coli C","iEC1344_C",1344,1934,2726,TRUE,498388,"27667363",2016
+"21",29,"Escherichia coli CFT073","ic_1306",1307,1938,2727,TRUE,199310,"24277855",2013
+"22",30,"Escherichia coli DH1","iEcDH1_1363",1363,1949,2751,TRUE,536056,"24277855",2013
+"23",32,"Escherichia coli DH1","iECDH1ME8569_1439",1439,1950,2756,TRUE,536056,"24277855",2013
+"24",34,"Escherichia coli DH5[alpha]","iEC1368_DH5a",1368,1951,2779,TRUE,668369,"27667363",2016
+"25",35,"Escherichia coli E24377A","iEcE24377_1341",1341,1974,2764,TRUE,331111,"24277855",2013
+"26",36,"Escherichia coli ED1a","iECED1_1282",1279,1929,2707,TRUE,585397,"24277855",2013
+"27",37,"Escherichia coli ETEC H10407","iETEC_1333",1333,1964,2757,TRUE,316401,"24277855",2013
+"28",38,"Escherichia coli HS","iEcHS_1320",1321,1965,2754,TRUE,331112,"24277855",2013
+"29",39,"Escherichia coli IAI1","iECIAI1_1343",1343,1970,2766,TRUE,585034,"24277855",2013
+"30",40,"Escherichia coli IAI39","iECIAI39_1322",1321,1957,2722,TRUE,585057,"24277855",2013
+"31",41,"Escherichia coli IHE3034","iECOK1_1307",1304,1943,2730,TRUE,714962,"24277855",2013
+"32",42,"Escherichia coli KO11FL","iEKO11_1354",1354,1974,2779,TRUE,595495,"24277855",2013
+"33",43,"Escherichia coli LF82","iLF82_1304",1302,1940,2727,TRUE,591946,"24277855",2013
+"34",44,"Escherichia coli NA114","iECNA114_1301",1301,1927,2719,TRUE,1033813,"24277855",2013
+"35",45,"Escherichia coli O103:H2 str. 12009","iECO103_1326",1327,1958,2759,TRUE,585395,"24277855",2013
+"36",46,"Escherichia coli O111:H- str. 11128","iECO111_1330",1328,1959,2761,TRUE,585396,"24277855",2013
+"37",47,"Escherichia coli O127:H6 str. E2348/69","iE2348C_1286",1284,1919,2704,TRUE,574521,"24277855",2013
+"38",48,"Escherichia coli O157:H7 str. EC4115","iECH74115_1262",1262,1918,2695,TRUE,444450,"24277855",2013
+"39",49,"Escherichia coli O157:H7 str. EDL933","iZ_1308",1308,1923,2722,TRUE,155864,"24277855",2013
+"40",50,"Escherichia coli O157:H7 str. Sakai","iECs_1301",1301,1923,2721,TRUE,386585,"24277855",2013
+"41",51,"Escherichia coli O157:H7 str. TW14359","iECSP_1301",1299,1920,2713,TRUE,544404,"24277855",2013
+"42",52,"Escherichia coli O26:H11 str. 11368","iECO26_1355",1355,1965,2781,TRUE,573235,"24277855",2013
+"43",53,"Escherichia coli O55:H7 str. CB9615","iG2583_1286",1283,1919,2705,TRUE,701177,"24277855",2013
+"44",54,"Escherichia coli O83:H1 str. NRG 857C","iNRG857_1313",1311,1945,2736,TRUE,685038,"24277855",2013
+"45",55,"Escherichia coli S88","iECS88_1305",1305,1944,2730,TRUE,585035,"24277855",2013
+"46",56,"Escherichia coli SE11","iECSE_1348",1348,1957,2769,TRUE,409438,"24277855",2013
+"47",57,"Escherichia coli SE15","iECSF_1327",1327,1951,2743,TRUE,431946,"24277855",2013
+"48",58,"Escherichia coli SMS-3-5","iEcSMS35_1347",1347,1949,2747,TRUE,439855,"24277855",2013
+"49",59,"Escherichia coli str. K-12 substr. DH10B","iECDH10B_1368",1327,1947,2743,TRUE,316385,"24277855",2013
+"50",60,"Escherichia coli str. K-12 substr. MG1655","iAF1260",1261,1668,2382,FALSE,511145,"17593909",2007
+"51",66,"Escherichia coli str. K-12 substr. MG1655","iAF1260b",1261,1668,2388,FALSE,511145,"19840862",2010
+"52",72,"Escherichia coli str. K-12 substr. MG1655","e_coli_core",137,72,95,FALSE,511145,"26443778",2010
+"53",78,"Escherichia coli str. K-12 substr. MG1655","iJO1366",1367,1805,2583,TRUE,511145,"21988831",2011
+"54",84,"Escherichia coli str. K-12 substr. MG1655","iJR904",904,761,1075,FALSE,511145,"12952533",2003
+"55",90,"Escherichia coli str. K-12 substr. MG1655","iML1515",1516,1877,2712,TRUE,511145,"29020004",2017
+"56",96,"Escherichia coli str. K-12 substr. W3110","iY75_1357",1358,1953,2760,TRUE,316407,"24277855",2013
+"57",98,"Escherichia coli str. K-12 substr. W3110","iEC1372_W3110",1372,1918,2758,TRUE,316407,"27667363",2016
+"58",100,"Escherichia coli UM146","iUMN146_1321",1319,1944,2736,TRUE,869729,"24277855",2013
+"59",101,"Escherichia coli UMN026","iECUMN_1333",1332,1935,2741,TRUE,585056,"24277855",2013
+"60",102,"Escherichia coli UMNK88","iUMNK88_1353",1353,1971,2778,TRUE,696406,"24277855",2013
+"61",103,"Escherichia coli UTI89","iUTI89_1310",1310,1942,2726,TRUE,364106,"24277855",2013
+"62",104,"Escherichia coli W","iECW_1372",1372,1975,2783,TRUE,566546,"24277855",2013
+"63",107,"Escherichia coli W","iWFL_1372",1372,1975,2783,TRUE,566546,"24277855",2013
+"64",110,"Escherichia coli W","iEC1364_W",1364,1927,2764,TRUE,566546,"27667363",2016
+"65",113,"Geobacter metallireducens GS-15","iAF987",987,1109,1285,FALSE,269799,"24762737",2014
+"66",114,"Helicobacter pylori 26695","iIT341",339,485,554,FALSE,85962,"16077130",2005
+"67",115,"Klebsiella pneumoniae subsp. pneumoniae MGH 78578","iYL1228",1229,1658,2262,FALSE,272620,"21296962",2011
+"68",116,"Lactococcus lactis subsp. cremoris MG1363","iNF517",516,650,754,FALSE,416870,"23974365",2013
+"69",117,"Methanosarcina barkeri str. Fusaro","iAF692",692,628,690,FALSE,269797,"16738551",2006
+"70",118,"Mycobacterium tuberculosis H37Rv","iEK1008",1008,998,1226,FALSE,83332,"29499714",2018
+"71",120,"Mycobacterium tuberculosis H37Rv","iNJ661",661,826,1025,FALSE,83332,"17555602",2007
+"72",122,"Phaeodactylum tricornutum CCAP 1055/1","iLB1027_lipid",1027,2172,4456,FALSE,556484,"27152931",2016
+"73",123,"Plasmodium berghei","iAM_Pb448",448,903,1067,FALSE,5821,"29300748",2018
+"74",124,"Plasmodium cynomolgi strain B","iAM_Pc455",455,907,1074,FALSE,1120755,"29300748",2018
+"75",125,"Plasmodium falciparum 3D7","iAM_Pf480",480,909,1083,FALSE,36329,"29300748",2018
+"76",126,"Plasmodium knowlesi strain H","iAM_Pk459",459,909,1079,FALSE,5851,"29300748",2018
+"77",127,"Plasmodium vivax Sal-1","iAM_Pv461",461,909,1078,FALSE,126793,"29300748",2018
+"78",128,"Pseudomonas putida KT2440","iJN746",746,909,1056,FALSE,160488,"18793442",2008
+"79",130,"Pseudomonas putida KT2440","iJN1463",1452,2153,2927,FALSE,160488,"",2020
+"80",132,"Saccharomyces cerevisiae S288c","iND750",750,1059,1266,FALSE,559292,"15197165",2004
+"81",134,"Saccharomyces cerevisiae S288c","iMM904",905,1226,1577,FALSE,559292,"19321003",2009
+"82",136,"Salmonella enterica subsp. enterica serovar Typhimurium str. LT2","STM_v1_0",1271,1802,2545,FALSE,99287,"21244678",2011
+"83",137,"Salmonella pan-reactome","iYS1720",1707,2436,3357,FALSE,NA,"30218022",2018
+"84",138,"Shigella boydii CDC 3083-94","iSbBS512_1146",1147,1912,2592,TRUE,344609,"24277855",2013
+"85",139,"Shigella boydii Sb227","iSBO_1134",1134,1910,2592,TRUE,300268,"24277855",2013
+"86",140,"Shigella dysenteriae Sd197","iSDY_1059",1059,1890,2540,TRUE,300267,"24277855",2013
+"87",141,"Shigella flexneri 2002017","iSFxv_1172",1169,1918,2639,TRUE,591020,"24277855",2013
+"88",142,"Shigella flexneri 2a str. 2457T","iS_1188",1188,1914,2620,TRUE,198215,"24277855",2013
+"89",143,"Shigella flexneri 2a str. 301","iSF_1195",1195,1917,2631,TRUE,198214,"24277855",2013
+"90",144,"Shigella flexneri 5 str. 8401","iSFV_1184",1184,1917,2622,TRUE,373384,"24277855",2013
+"91",145,"Shigella sonnei Ss046","iSSON_1240",1240,1938,2694,TRUE,300269,"24277855",2013
+"92",146,"Staphylococcus aureus subsp. aureus N315","iSB619",619,655,743,FALSE,158879,"15752426",2005
+"93",147,"Staphylococcus aureus subsp. aureus USA300_TCH1516","iYS854",866,1335,1455,FALSE,451516,"30625152",2019
+"94",148,"Synechococcus elongatus PCC 7942","iJB785",785,768,849,FALSE,1140,"27911809",2016
+"95",149,"Synechocystis sp. PCC 6803","iJN678",622,795,863,FALSE,1148,"22308420",2012
+"96",151,"Synechocystis sp. PCC 6803","iSynCJ816",816,928,1044,FALSE,1148,"10.1016/j.algal.2017.09.013",2017
+"97",153,"Thermotoga maritima MSB8","iLJ478",482,570,652,FALSE,243274,"19762644",2009
+"98",154,"Trypanosoma cruzi Dm28c","iIS312",312,606,519,FALSE,1416333,"",2020
+"99",158,"Trypanosoma cruzi Dm28c","iIS312_Epimastigote",312,606,519,FALSE,1416333,"",2020
+"100",162,"Trypanosoma cruzi Dm28c","iIS312_Amastigote",312,606,519,FALSE,1416333,"",2020
+"101",166,"Trypanosoma cruzi Dm28c","iIS312_Trypomastigote",312,606,519,FALSE,1416333,"",2020
+"102",170,"Yersinia pestis CO92","iPC815",815,1552,1961,FALSE,214092,"21995956",2011