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Commit 449e3788 authored by Sajjad Ghaffarinasabsharabiani's avatar Sajjad Ghaffarinasabsharabiani
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networkComplexityBigg/Data/shortOrganismNames.csv 0 → 100644
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"","X","bigg_id","organism","shortO","sO"
"1",1,"iYO844","Bacillus subtilis subsp. subtilis str. 168","Bacillus subtilis","B. subtilis"
"2",2,"iSM199","Buchnera aphidicola str. APS","Buchnera aphidicola","B. aphidicola"
"3",3,"iRC1080","Chlamydomonas","Chlamydomonas","Chlamydomonas"
"4",4,"iHN637","Clostridium ljungdahlii DSM 13528","Clostridium ljungdahlii","C. ljungdahlii"
"5",5,"iEC042_1314","Escherichia coli 042","Escherichia coli","E. coli"
"6",6,"iECP_1309","Escherichia coli 536","Escherichia coli","E. coli"
"7",7,"iEC55989_1330","Escherichia coli 55989","Escherichia coli","E. coli"
"8",8,"iECABU_c1320","Escherichia coli ABU 83972","Escherichia coli","E. coli"
"9",9,"iAPECO1_1312","Escherichia coli APEC O1","Escherichia coli","E. coli"
"10",10,"iEcolC_1368","Escherichia coli ATCC 8739","Escherichia coli","E. coli"
"11",11,"iECD_1391","Escherichia coli BL21(DE3)","Escherichia coli","E. coli"
"12",12,"iB21_1397","Escherichia coli BL21(DE3)","Escherichia coli","E. coli"
"13",13,"iECBD_1354","Escherichia coli BL21-Gold(DE3)pLysS AG","Escherichia coli","E. coli"
"14",14,"iECB_1328","Escherichia coli B str. REL606","Escherichia coli","E. coli"
"15",15,"iBWG_1329","Escherichia coli BW2952","Escherichia coli","E. coli"
"16",16,"ic_1306","Escherichia coli CFT073","Escherichia coli","E. coli"
"17",17,"iEcDH1_1363","Escherichia coli DH1","Escherichia coli","E. coli"
"18",18,"iECDH1ME8569_1439","Escherichia coli DH1","Escherichia coli","E. coli"
"19",19,"iEcE24377_1341","Escherichia coli E24377A","Escherichia coli","E. coli"
"20",20,"iECED1_1282","Escherichia coli ED1a","Escherichia coli","E. coli"
"21",21,"iETEC_1333","Escherichia coli ETEC H10407","Escherichia coli","E. coli"
"22",22,"iEcHS_1320","Escherichia coli HS","Escherichia coli","E. coli"
"23",23,"iECIAI1_1343","Escherichia coli IAI1","Escherichia coli","E. coli"
"24",24,"iECIAI39_1322","Escherichia coli IAI39","Escherichia coli","E. coli"
"25",25,"iECOK1_1307","Escherichia coli IHE3034","Escherichia coli","E. coli"
"26",26,"iEKO11_1354","Escherichia coli KO11FL","Escherichia coli","E. coli"
"27",27,"iLF82_1304","Escherichia coli LF82","Escherichia coli","E. coli"
"28",28,"iECNA114_1301","Escherichia coli NA114","Escherichia coli","E. coli"
"29",29,"iECO103_1326","Escherichia coli O103:H2 str. 12009","Escherichia coli","E. coli"
"30",30,"iECO111_1330","Escherichia coli O111:H- str. 11128","Escherichia coli","E. coli"
"31",31,"iE2348C_1286","Escherichia coli O127:H6 str. E2348/69","Escherichia coli","E. coli"
"32",32,"iECH74115_1262","Escherichia coli O157:H7 str. EC4115","Escherichia coli","E. coli"
"33",33,"iZ_1308","Escherichia coli O157:H7 str. EDL933","Escherichia coli","E. coli"
"34",34,"iECs_1301","Escherichia coli O157:H7 str. Sakai","Escherichia coli","E. coli"
"35",35,"iECSP_1301","Escherichia coli O157:H7 str. TW14359","Escherichia coli","E. coli"
"36",36,"iECO26_1355","Escherichia coli O26:H11 str. 11368","Escherichia coli","E. coli"
"37",37,"iG2583_1286","Escherichia coli O55:H7 str. CB9615","Escherichia coli","E. coli"
"38",38,"iNRG857_1313","Escherichia coli O83:H1 str. NRG 857C","Escherichia coli","E. coli"
"39",39,"iECS88_1305","Escherichia coli S88","Escherichia coli","E. coli"
"40",40,"iECSE_1348","Escherichia coli SE11","Escherichia coli","E. coli"
"41",41,"iECSF_1327","Escherichia coli SE15","Escherichia coli","E. coli"
"42",42,"iEcSMS35_1347","Escherichia coli SMS-3-5","Escherichia coli","E. coli"
"43",43,"iECDH10B_1368","Escherichia coli str. K-12 substr. DH10B","Escherichia coli","E. coli"
"44",44,"e_coli_core","Escherichia coli str. K-12 substr. MG1655","Escherichia coli","E. coli"
"45",45,"iAF1260","Escherichia coli str. K-12 substr. MG1655","Escherichia coli","E. coli"
"46",46,"iAF1260b","Escherichia coli str. K-12 substr. MG1655","Escherichia coli","E. coli"
"47",47,"iJO1366","Escherichia coli str. K-12 substr. MG1655","Escherichia coli","E. coli"
"48",48,"iJR904","Escherichia coli str. K-12 substr. MG1655","Escherichia coli","E. coli"
"49",49,"iY75_1357","Escherichia coli str. K-12 substr. W3110","Escherichia coli","E. coli"
"50",50,"iUMN146_1321","Escherichia coli UM146","Escherichia coli","E. coli"
"51",51,"iECUMN_1333","Escherichia coli UMN026","Escherichia coli","E. coli"
"52",52,"iUMNK88_1353","Escherichia coli UMNK88","Escherichia coli","E. coli"
"53",53,"iUTI89_1310","Escherichia coli UTI89","Escherichia coli","E. coli"
"54",54,"iECW_1372","Escherichia coli W","Escherichia coli","E. coli"
"55",55,"iWFL_1372","Escherichia coli W","Escherichia coli","E. coli"
"56",56,"iAF987","Geobacter metallireducens GS-15","Geobacter metallireducens","G. metallireducens"
"57",57,"iIT341","Helicobacter pylori 26695","Helicobacter pylori","H. pylori"
"58",58,"iYL1228","Klebsiella pneumoniae subsp. pneumoniae MGH 78578","Klebsiella pneumoniae","K. pneumoniae"
"59",59,"iAF692","Methanosarcina barkeri str. Fusaro","Methanosarcina barkeri","M. barkeri"
"60",60,"iNJ661","Mycobacterium tuberculosis H37Rv","Mycobacterium tuberculosis","M. tuberculosis"
"61",61,"iJN746","Pseudomonas putida KT2440","Pseudomonas putida","P. putida"
"62",62,"iMM904","Saccharomyces cerevisiae S288c","Saccharomyces cerevisiae","S. cerevisiae"
"63",63,"iND750","Saccharomyces cerevisiae S288c","Saccharomyces cerevisiae","S. cerevisiae"
"64",64,"STM_v1_0","Salmonella enterica subsp. enterica serovar Typhimurium str. LT2","Salmonella enterica","S. enterica"
"65",65,"iSbBS512_1146","Shigella boydii CDC 3083-94","Shigella boydii","S. boydii"
"66",66,"iSBO_1134","Shigella boydii Sb227","Shigella boydii","S. boydii"
"67",67,"iSDY_1059","Shigella dysenteriae Sd197","Shigella dysenteriae","S. dysenteriae"
"68",68,"iSFxv_1172","Shigella flexneri 2002017","Shigella flexneri","S. flexneri"
"69",69,"iS_1188","Shigella flexneri 2a str. 2457T","Shigella flexneri","S. flexneri"
"70",70,"iSF_1195","Shigella flexneri 2a str. 301","Shigella flexneri","S. flexneri"
"71",71,"iSFV_1184","Shigella flexneri 5 str. 8401","Shigella flexneri","S. flexneri"
"72",72,"iSSON_1240","Shigella sonnei Ss046","Shigella sonnei","S. sonnei"
"73",73,"iSB619","Staphylococcus aureus subsp. aureus N315","Staphylococcus aureus","S. aureus"
"74",74,"iJN678","Synechocystis sp. PCC 6803","Synechocystis","Synechocystis"
"75",75,"iLJ478","Thermotoga maritima MSB8","Thermotoga maritima","T. maritima"
"76",76,"iPC815","Yersinia pestis CO92","Yersinia pestis","Y. pestis"
"77",77,"iAM_Pb448","Plasmodium berghei","Plasmodium berghei","P. berghei"
"78",78,"iAM_Pc455","Plasmodium cynomolgi strain B","Plasmodium cynomolgi","P. cynomolgi"
"79",79,"iAM_Pf480","Plasmodium falciparum 3D7","Plasmodium falciparum","P. falciparum"
"80",80,"iAM_Pk459","Plasmodium knowlesi strain H","Plasmodium knowlesi","P. knowlesi"
"81",81,"iAM_Pv461","Plasmodium vivax Sal-1","Plasmodium vivax","P. vivax"
"82",82,"iCN718","Acinetobacter baumannii AYE","Acinetobacter baumannii","A. baumannii"
"83",83,"iCN900","Clostridioides difficile 630","Clostridioides difficile","C. difficile"
"84",84,"iEC1344_C","Escherichia coli C","Escherichia coli","E. coli"
"85",85,"iEC1349_Crooks","Escherichia coli ATCC 8739","Escherichia coli","E. coli"
"86",86,"iEC1356_Bl21DE3","Escherichia coli BL21(DE3)","Escherichia coli","E. coli"
"87",87,"iEC1364_W","Escherichia coli W","Escherichia coli","E. coli"
"88",88,"iEC1368_DH5a","Escherichia coli DH5[alpha]","Escherichia coli","E. coli"
"89",89,"iEC1372_W3110","Escherichia coli str. K-12 substr. W3110","Escherichia coli","E. coli"
"90",90,"iEK1008","Mycobacterium tuberculosis H37Rv","Mycobacterium tuberculosis","M. tuberculosis"
"91",91,"iIS312","Trypanosoma cruzi Dm28c","Trypanosoma cruzi","T. cruzi"
"92",92,"iIS312_Amastigote","Trypanosoma cruzi Dm28c","Trypanosoma cruzi","T. cruzi"
"93",93,"iIS312_Epimastigote","Trypanosoma cruzi Dm28c","Trypanosoma cruzi","T. cruzi"
"94",94,"iIS312_Trypomastigote","Trypanosoma cruzi Dm28c","Trypanosoma cruzi","T. cruzi"
"95",95,"iJB785","Synechococcus elongatus PCC 7942","Synechococcus elongatus","S. elongatus"
"96",96,"iLB1027_lipid","Phaeodactylum tricornutum CCAP 1055/1","Phaeodactylum tricornutum","P. tricornutum"
"97",97,"iNF517","Lactococcus lactis subsp. cremoris MG1363","Lactococcus lactis","L. lactis"
"98",98,"iSynCJ816","Synechocystis sp. PCC 6803","Synechocystis","Synechocystis"
"99",99,"iYS1720","Salmonella pan-reactome","Salmonella","Salmonella"
"100",100,"iML1515","Escherichia coli str. K-12 substr. MG1655","Escherichia coli","E. coli"
"101",101,"iJN1463","Pseudomonas putida KT2440","Pseudomonas putida","P. putida"
"102",102,"iYS854","Staphylococcus aureus subsp. aureus USA300_TCH1516 ","Staphylococcus aureus","S. aureus"
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