Upload New File

networkComplexityBigg/Downloads/getModels.py

+#!/usr/bin/python3
+
+
+import urllib.request
+
+import json
+
+def getData(url):
+	response = urllib.request.urlopen(url)
+	data = response.read()
+	text = data.decode('utf-8')
+	return json.loads(text)
+
+
+
+header = ["bigg_id", "organism", "gene_count", "metabolite_count", "reaction_count"]
+print("\t".join(header))
+
+if __name__ == "__main__":
+	models = getData('http://bigg.ucsd.edu/api/v2/models')
+	
+	for m in models["results"]:
+		values = []
+		for i in header:
+			values.append(str(m[i]))
+		print("\t".join(values))
+		
+		response = urllib.request.urlopen("http://bigg.ucsd.edu/static/models/" + m["bigg_id"] + ".xml")
+		data = response.read()
+		f = open("../sourceData/model/"+ m["bigg_id"] + ".xml", "w")
+		f.write(data.decode('utf-8'))
+		f.close()
+	
+	
+	
+	
+	
+	
+	
+