Skip to content
Snippets Groups Projects
Commit 0bbfedbf authored by Sajjad Ghaffarinasabsharabiani's avatar Sajjad Ghaffarinasabsharabiani
Browse files

Upload New File

parent 862cd95b
No related branches found
No related tags found
No related merge requests found
Show whitespace changes
Inline Side-by-side
networkComplexityBigg/Data/selectBiomassTable_mod.csv 0 → 100644
+ 139
− 0
View file @ 0bbfedbf
react_id,modelName,numberBiomassReactions,use,reactionName
BIOMASS_Ecoli_core_w_GAM,e_coli_core,1,X,Biomass Objective Function with GAM
BIOMASS_Ec_iAF1260_core_59p81M,iAF1260,1,X,E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate
BIOMASS_Ec_iAF1260_core_59p81M,iAF1260b,1,X,E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate
BIOMASS_Mb_30,iAF692,1,X,Mb biomass 30
BIOMASS_Gm_GS15_WT_79p20M,iAF987,1,X,Geobacter metallireducens biomass objective function (iAF987) - WT - with 79.20 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iAPECO1_1312,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iAPECO1_1312,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iB21_1397,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iB21_1397,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iBWG_1329,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iBWG_1329,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,ic_1306,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,ic_1306,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iE2348C_1286,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iE2348C_1286,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iEC042_1314,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iEC042_1314,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iEC55989_1330,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iEC55989_1330,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECABU_c1320,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECABU_c1320,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECB_1328,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECB_1328,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECBD_1354,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECBD_1354,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECD_1391,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECD_1391,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECDH10B_1368,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECDH10B_1368,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iEcDH1_1363,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iEcDH1_1363,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECDH1ME8569_1439,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECDH1ME8569_1439,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iEcE24377_1341,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iEcE24377_1341,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECED1_1282,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECED1_1282,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECH74115_1262,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECH74115_1262,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iEcHS_1320,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iEcHS_1320,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECIAI1_1343,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECIAI1_1343,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECIAI39_1322,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECIAI39_1322,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECNA114_1301,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECNA114_1301,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECO103_1326,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECO103_1326,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECO111_1330,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECO111_1330,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECO26_1355,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECO26_1355,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECOK1_1307,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECOK1_1307,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iEcolC_1368,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iEcolC_1368,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECP_1309,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECP_1309,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECs_1301,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECs_1301,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECS88_1305,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECS88_1305,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECSE_1348,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECSE_1348,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECSF_1327,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECSF_1327,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iEcSMS35_1347,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iEcSMS35_1347,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECSP_1301,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECSP_1301,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECUMN_1333,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECUMN_1333,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iECW_1372,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iECW_1372,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iEKO11_1354,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iEKO11_1354,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iETEC_1333,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iETEC_1333,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iG2583_1286,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iG2583_1286,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Cl_DSM_WT_46p666M1,iHN637,1,X,Clostridium ljungdahlii biomass objective function (iAF1xxx) - WT - with 46.666 GAM estimate
BIOMASS_HP_published,iIT341,1,X,BiomassHP published
BIOMASS_Ec_SynAuto,iJN678,3,,Autotrophic Biomass Ecuation
BIOMASS_Ec_SynMixo,iJN678,3,,Mixotrophic Biomass Ecuation
BIOMASS_Ec_SynHetero,iJN678,3,X,Heterotrophic Biomass Ecuation
BIOMASS_KT_TEMP,iJN746,1,X,BiomassKT TEMP
BIOMASS_Ec_iJO1366_WT_53p95M,iJO1366,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iJO1366,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ecoli,iJR904,1,X,BiomassEcoli
BIOMASS_Ec_iJO1366_WT_53p95M,iLF82_1304,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iLF82_1304,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ecoli_TM,iLJ478,1,X,Biomass Thermotoga - values taken from iJR904
BIOMASS_SC5_notrace,iMM904,1,X,Biomass SC5 notrace
BIOMASS_SC4_bal,iND750,1,X,Biomass SC4 bal
BIOMASS_Mtb_9_60atp,iNJ661,1,X,Biomass Mtb 9 60atp
BIOMASS_Ec_iJO1366_WT_53p95M,iNRG857_1313,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iNRG857_1313,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_25C,iPC815,2,,25C biomass
BIOMASS_37C,iPC815,2,X,37C biomass
BIOMASS_Chlamy_auto,iRC1080,3,,Biomass (autotrophic)
BIOMASS_Chlamy_mixo,iRC1080,3,,Biomass (mixotrophic)
BIOMASS_Chlamy_hetero,iRC1080,3,X,Biomass (heterotrophic)
BIOMASS_Ec_iJO1366_WT_53p95M,iS_1188,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iS_1188,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_SA_8a,iSB619,1,X,SA biomass 8 without ions
BIOMASS_Ec_iJO1366_WT_53p95M,iSbBS512_1146,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iSbBS512_1146,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iSBO_1134,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iSBO_1134,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iSDY_1059,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iSDY_1059,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iSF_1195,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iSF_1195,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iSFV_1184,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iSFV_1184,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iSFxv_1172,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iSFxv_1172,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iSSON_1240,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iSSON_1240,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iUMN146_1321,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iUMN146_1321,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iUMNK88_1353,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iUMNK88_1353,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iUTI89_1310,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iUTI89_1310,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iWFL_1372,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iWFL_1372,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_WT_53p95M,iY75_1357,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iY75_1357,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_,iYL1228,1,X,Biomass
BIOMASS_BS_10,iYO844,1,X,B subtilis biomass demand
BIOMASS_Ec_iJO1366_WT_53p95M,iZ_1308,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate
BIOMASS_Ec_iJO1366_core_53p95M,iZ_1308,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate
BIOMASS_Ec_iAF1260_core_59p81M,STM_v1_0,3,X,E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate
BIOMASS_iRR1083,STM_v1_0,3,,Biomass equation from http://www.biomedcentral.com/1752-0509/3/38
BIOMASS_iRR1083_metals,STM_v1_0,3,,Biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function
Biomass,iSM199,1,X,biomass reaction
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment