Snakefile

configfile: 'config.yaml'

DIR = 'workflows'

module_config = {'data_dir': config['data_dir'],
                 'random_seed': config['random_seed']}

module ann_data:
    snakefile: DIR + '/ANN_data.smk'
    config: {**config['ANN_Data'], **module_config}

use rule * from ann_data as ANN_*

module ann_training:
    snakefile: DIR + '/ANN_training.smk'
    config: {**config['ANN_Training'], **module_config}

use rule * from ann_training as ANN_*

module approximation:
    snakefile: DIR + '/approximation.smk'
    config: {**config['Approximation'], **module_config}

use rule * from approximation as DG_*

rule all:
    input:
        rules.ANN_all.input,
        rules.DG_all.input
    default_target: True