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DESCRIPTION NaN GiB
Package: sybil
Type: Package
Title: Efficient Constrained Based Modelling in R
Version: 1.3.2
Date: 2015-10-19
Authors@R: c(
person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person("Gabriel", "Gelius-Dietrich", role = c("aut")),
person("Rajen", "Piernikarczyk", role = "ctb"),
person(c("Marc", "Andre"), "Daxer", role = "ctb"),
person("Benjamin", "Braasch", role = "ctb"),
person("Abdelmoneim", "Desouki", role = "ctb"),
person(c("Martin", "J."), "Lercher", role = "ctb"))
Maintainer: C. Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
Depends: R (>= 2.14.2), Matrix, lattice
Imports: methods
Suggests: glpkAPI (>= 1.2.8), cplexAPI (>= 1.2.4), clpAPI (>= 1.2.4),
lpSolveAPI (>= 5.5.2.0), parallel, grid
URL:
http://www.cs.hhu.de/en/research-groups/bioinformatics/software/sybil.html
Description: This Systems Biology Library for R implements algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis). Most of the current LP/MILP solvers are supported via additional packages.
LazyLoad: yes
License: GPL-3 | file LICENSE
Collate: generics.R validmodelorg.R validoptsol.R validreactId.R
validreactId_Exch.R validsysBiolAlg.R addAlgorithm.R
addExchReact.R addReact.R addSolver.R blockedReact.R
bracket_pairs.R ceilValues.R changeBounds.R changeGPR.R
changeObjFunc.R checkAlgorithm.R checkDefaultMethod.R
checkEmptyField.R checkReactId.R check_brackets.R
createReactionString.R deadEndMetabolite.R doInRound.R
doubleFluxDel.R doubleGeneDel.R doubleReact.R editEnvir.R
findExchReact.R floorValues.R fluxVar.R geneDel.R
geneDeletion.R generateFluxdels.R generateModKey.R generateWT.R
getsybilenv.R makeLPcompatible.R mod2irrev.R modelorg2ExPA.R
modelorg2text.R modelorg2tsv.R multiDel.R oneFluxDel.R
oneGeneDel.R onlyChangeGPR.R onlyCheckGPR.R optObj_basicfunc.R
optObj_lpSolveAPIcompat.R optimizer.R parseBoolean.R phpp.R
ppProcessing.R prepareSubSysMatrix.R printLogComment.R
printNamedList.R progress.R promptSysBiolAlg.R recodeMatrix.R
readTEXTmod.R readTSVmod.R reassignFwBwMatch.R rmReact.R
robAna.R settings.R singletonMetabolite.R sybilStack.R ypd.R
zzz.R modelorgClass.R modelorg_irrevClass.R optObj_pointer.R
optObjClass.R optObj_clpAPIClass.R optObj_cplexAPIClass.R
optObj_glpkAPIClass.R optObj_lpSolveAPIClass.R
sybilErrorClass.R ppProcClass.R netFluxClass.R
fluxDistributionClass.R reactIdClass.R reactId_ExchClass.R
optsolClass.R optsol_blockedReactClass.R
optsol_optimizeProbClass.R optsol_fluxVarClass.R
optsol_fluxdelClass.R optsol_robAnaClass.R optsol_phppClass.R
optsol_genedelClass.R checksolClass.R summaryOptsolClass.R
sysBiolAlgClass.R sysBiolAlg_fbaClass.R
sysBiolAlg_fbaEasyConstraintClass.R sysBiolAlg_fvClass.R
sysBiolAlg_lmomaClass.R sysBiolAlg_momaClass.R
sysBiolAlg_mtfClass.R sysBiolAlg_mtfEasyConstraintClass.R
sysBiolAlg_roomClass.R sybilLogClass.R
Packaged: 2014-11-19 20:39:37 UTC; gabriel
Author: C. Jonathan Fritzemeier [cre, ctb],
Gabriel Gelius-Dietrich [aut],
Rajen Piernikarczyk [ctb],
Marc Andre Daxer [ctb],
Benjamin Braasch [ctb],
Abdelmoneim Desouki [ctb],
Martin J. Lercher [ctb]