Commit 82194f3c authored by Claus Jonathan Fritzemeier's avatar Claus Jonathan Fritzemeier
Browse files

changes in configure script

parent 04a398bb
Package: sybilSBML
Type: Package
Title: SBML Integration in Package 'Sybil'
Version: 3.0.1
Date: 2016-12-16
Version: 3.0.2
Date: 2017-01-12
Authors@R: c(person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person("Gabriel", "Gelius-Dietrich", role = c("aut", "ctb")),
person("Deya", "Alzoubi", role = "ctb"),
person("Ardalan", "Habil", role = "ctb"))
Maintainer: C. Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
Depends: R (>= 2.14.2), Matrix, sybil (>= 2.0.0)
SystemRequirements: libSBML-core-plus-packages (>= 5.13)
Imports: methods
Description: 'SBML' (Systems Biology Markup Language) with FBC (Flux Balance Constraints) integration in 'sybil'. Many constraint based metabolic models are published in 'SBML' format ('*.xml'). Herewith is the ability to read, write, and check 'SBML' files in 'sybil' provided.
License: GPL-3 | file LICENSE
LazyLoad: yes
Collate: generics.R sbmlPtrClass.R sbmlErrorClass.R sybilSBML.R
uglyHack.R readSBMLmod.R zzz.R
Packaged: 2016-12-16 07:11:55 UTC; jonathan
Packaged: 2017-01-12 07:11:55 UTC; jonathan
Author: C. Jonathan Fritzemeier [cre, ctb],
Gabriel Gelius-Dietrich [aut, ctb],
Deya Alzoubi [ctb],
......
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for sybilSBML 3.0.0.
# Generated by GNU Autoconf 2.69 for sybilSBML 3.0.2.
#
# Report bugs to <clausjonathan.fritzemeier@uni-duesseldorf.de>.
#
......@@ -580,8 +580,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='sybilSBML'
PACKAGE_TARNAME='sybilsbml'
PACKAGE_VERSION='3.0.0'
PACKAGE_STRING='sybilSBML 3.0.0'
PACKAGE_VERSION='3.0.2'
PACKAGE_STRING='sybilSBML 3.0.2'
PACKAGE_BUGREPORT='clausjonathan.fritzemeier@uni-duesseldorf.de'
PACKAGE_URL=''
......@@ -1230,7 +1230,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
\`configure' configures sybilSBML 3.0.0 to adapt to many kinds of systems.
\`configure' configures sybilSBML 3.0.2 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
......@@ -1291,7 +1291,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
short | recursive ) echo "Configuration of sybilSBML 3.0.0:";;
short | recursive ) echo "Configuration of sybilSBML 3.0.2:";;
esac
cat <<\_ACEOF
......@@ -1378,7 +1378,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
sybilSBML configure 3.0.0
sybilSBML configure 3.0.2
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
......@@ -1747,7 +1747,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by sybilSBML $as_me 3.0.0, which was
It was created by sybilSBML $as_me 3.0.2, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
......@@ -3650,7 +3650,7 @@ if test "x$ac_cv_header_sbml_packages_fbc_common_FbcExtensionTypes_h" = xyes; th
else
as_fn_error $? "Could not find specific FBC header of libSBML:
make sure your libSBML version is >= 5.13." "$LINENO" 5
make sure your libSBML version is >= 5.13 and including the FBC package." "$LINENO" 5
fi
......@@ -3670,7 +3670,7 @@ _ACEOF
else
as_fn_error $? "Could not find specific FBC function of libSBML:
make sure your libSBML version is >= 5.13." "$LINENO" 5
make sure your libSBML version is >= 5.13 and including the FBC package." "$LINENO" 5
fi
done
......@@ -4239,7 +4239,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by sybilSBML $as_me 3.0.0, which was
This file was extended by sybilSBML $as_me 3.0.2, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
......@@ -4292,7 +4292,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
sybilSBML config.status 3.0.0
sybilSBML config.status 3.0.2
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"
......
AC_INIT([sybilSBML], [3.0.0], [clausjonathan.fritzemeier@uni-duesseldorf.de])
AC_INIT([sybilSBML], [3.0.2], [clausjonathan.fritzemeier@uni-duesseldorf.de])
dnl # --------------------------------------------------------------------
dnl # global (environment) variables
......@@ -242,7 +242,7 @@ AC_CHECK_LIB([sbml], [readSBML], ,
AC_CHECK_HEADER([sbml/packages/fbc/common/FbcExtensionTypes.h], ,
AC_MSG_ERROR([Could not find specific FBC header of libSBML:
make sure your libSBML version is >= 5.13.]),
make sure your libSBML version is >= 5.13 and including the FBC package.]),
[#include <sbml/SBMLTypes.h>])
#AC_CHECK_LIB([sbml], [SBMLExtensionRegistry_getRegisteredPackages], ,
......@@ -251,7 +251,7 @@ AC_CHECK_HEADER([sbml/packages/fbc/common/FbcExtensionTypes.h], ,
AC_CHECK_FUNCS([SBase_getPlugin SBMLExtensionRegistry_getRegisteredPackages GeneProductAssociation_setAssociation FbcReactionPlugin_getLowerFluxBound], ,
AC_MSG_ERROR([Could not find specific FBC function of libSBML:
make sure your libSBML version is >= 5.13.]))
make sure your libSBML version is >= 5.13 and including the FBC package.]))
#AC_SEARCH_LIBS([SBase_getPlugin], [sbml], ,
# AC_MSG_ERROR([Could not find specific FBC function of libSBML:
......
GNU R package sybilSBML: Link to libSBML for sybil
# ---------------------------------------------------------------------------- #
# All Systems
# ---------------------------------------------------------------------------- #
First make sure you have installed libsbml >= 5.13 with the FBC package. At
http://sbml.org/Software/libSBML you can find installers for various plattforms
and the source to compile by yourself. In this case download the file
libSBML-5.13.0-core-plus-packages-src.* from their sourceforge page and use the
configure option "--enable-fbc".
The installation procedure for the sybilSBML package needs to know where to
find the libSBML include directory and where to find the callable library.
# ---------------------------------------------------------------------------- #
# Linux and MacOS X installation
# ---------------------------------------------------------------------------- #
......
GNU R package sybilSBML: Link to libSBML for sybil
The package sybilSBML requires a working installation of libSBML (>= 5.6.0)
(in particular libraries and header files).
The package sybilSBML requires a working installation of libSBML (>= 5.13.0)
(in particular libraries and header files with the FBC package).
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