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Commit e60e1f4b authored by Claus Jonathan Fritzemeier's avatar Claus Jonathan Fritzemeier
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minor changes for 2.0.4 cran upload

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Package: sybil Package: sybil
Type: Package Type: Package
Title: Efficient Constrained Based Modelling in R Title: Efficient Constrained Based Modelling
Version: 2.0.3 Version: 2.0.4
Date: 2017-07-12 Date: 2017-07-18
Authors@R: c( Authors@R: c(
person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"), person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person("Gabriel", "Gelius-Dietrich", role = c("aut")), person("Gabriel", "Gelius-Dietrich", role = c("aut")),
...@@ -18,7 +18,7 @@ Suggests: glpkAPI (>= 1.2.8), cplexAPI (>= 1.2.4), clpAPI (>= 1.2.4), ...@@ -18,7 +18,7 @@ Suggests: glpkAPI (>= 1.2.8), cplexAPI (>= 1.2.4), clpAPI (>= 1.2.4),
lpSolveAPI (>= 5.5.2.0), parallel, grid lpSolveAPI (>= 5.5.2.0), parallel, grid
URL: URL:
http://www.cs.hhu.de/lehrstuehle-und-arbeitsgruppen/computational-cell-biology/software/sybil.html http://www.cs.hhu.de/lehrstuehle-und-arbeitsgruppen/computational-cell-biology/software/sybil.html
Description: This Systems Biology Library for R implements algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis). Most of the current LP/MILP solvers are supported via additional packages. Description: This Systems Biology Package (Gelius-Dietrich et. al. (2012) <doi:10.1186/1752-0509-7-125>) implements algorithms for constraint based analyses of metabolic networks, e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis. The package is easily extendable for additional algorithms. Most of the current LP/MILP solvers are supported via additional packages.
LazyLoad: yes LazyLoad: yes
License: GPL-3 | file LICENSE License: GPL-3 | file LICENSE
Collate: generics.R validmodelorg.R validoptsol.R validreactId.R Collate: generics.R validmodelorg.R validoptsol.R validreactId.R
...@@ -53,7 +53,7 @@ Collate: generics.R validmodelorg.R validoptsol.R validreactId.R ...@@ -53,7 +53,7 @@ Collate: generics.R validmodelorg.R validoptsol.R validreactId.R
sysBiolAlg_lmomaClass.R sysBiolAlg_momaClass.R sysBiolAlg_lmomaClass.R sysBiolAlg_momaClass.R
sysBiolAlg_mtfClass.R sysBiolAlg_mtfEasyConstraintClass.R sysBiolAlg_mtfClass.R sysBiolAlg_mtfEasyConstraintClass.R
sysBiolAlg_roomClass.R sybilLogClass.R upgradeModelorg.R sysBiolAlg_roomClass.R sybilLogClass.R upgradeModelorg.R
Packaged: 2017-07-12 12:34:14 UTC; jonathan Packaged: 2017-07-18 09:34:14 UTC; jonathan
Author: C. Jonathan Fritzemeier [cre, ctb], Author: C. Jonathan Fritzemeier [cre, ctb],
Gabriel Gelius-Dietrich [aut], Gabriel Gelius-Dietrich [aut],
Rajen Piernikarczyk [ctb], Rajen Piernikarczyk [ctb],
......
...@@ -6,6 +6,13 @@ ...@@ -6,6 +6,13 @@
\newcommand{\CRANpkg}{\href{https://CRAN.R-project.org/package=#1}{\pkg{#1}}} \newcommand{\CRANpkg}{\href{https://CRAN.R-project.org/package=#1}{\pkg{#1}}}
\section{Changes in version 2.0.4 2017-07-18}{
\itemize{
\item Minor changes for CRAN submission.
}
}
% ---------------------------------------------------------------------------- %
\section{Changes in version 2.0.3 2017-07-12}{ \section{Changes in version 2.0.3 2017-07-12}{
\itemize{ \itemize{
\item The function \code{genrateWT} caused a problem when setting only \code{solverParm} and no solver. \item The function \code{genrateWT} caused a problem when setting only \code{solverParm} and no solver.
......
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