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validreactId.R

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    Claus Jonathan Fritzemeier authored
    ce28f8a5
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    validreactId.R 1.51 KiB
    #  validreactId.R
    #  FBA and friends with R.
    #
    #  Copyright (C) 2010-2014 Gabriel Gelius-Dietrich, Dpt. for Bioinformatics,
    #  Institute for Informatics, Heinrich-Heine-University, Duesseldorf, Germany.
    #  All right reserved.
    #  Email: geliudie@uni-duesseldorf.de
    #
    #  This file is part of sybil.
    #
    #  Sybil is free software: you can redistribute it and/or modify
    #  it under the terms of the GNU General Public License as published by
    #  the Free Software Foundation, either version 3 of the License, or
    #  (at your option) any later version.
    #
    #  Sybil is distributed in the hope that it will be useful,
    #  but WITHOUT ANY WARRANTY; without even the implied warranty of
    #  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    #  GNU General Public License for more details.
    #
    #  You should have received a copy of the GNU General Public License
    #  along with sybil.  If not, see <http://www.gnu.org/licenses/>.
    
    
    ################################################
    # Function: .validreactId
    #
    # Validity checking of an object of class reactId
    #
    
    
    .validreactId <- function(object) {
    
      if (!is(object, "reactId")) {
          return("needs an object of class reactId!")
      }
    
      if (length(mod_id(object)) != 1) {
          return("slot mod_id must be of length 1")
      }
    
      if (length(react_pos(object)) != length(object)) {
          return(paste("slot react_pos must be of length", length(object)))
      }
    
      if (length(react_id(object)) != length(object)) {
          return(paste("slot react_id must be of length", length(object)))
      }
    
      return(TRUE)
    }