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modelorg_irrev-class.Rd 2.88 KiB
\name{modelorg_irrev-class}
\docType{class}
\alias{modelorg_irrev-class}
\alias{modelorg_irrev}
\alias{matchrev<-,modelorg_irrev-method}
\alias{matchrev,modelorg_irrev-method}
\alias{matchrev<-}
\alias{matchrev}
\alias{irrev<-,modelorg_irrev-method}
\alias{irrev,modelorg_irrev-method}
\alias{irrev<-}
\alias{irrev}
\alias{rev2irrev<-,modelorg_irrev-method}
\alias{rev2irrev,modelorg_irrev-method}
\alias{rev2irrev<-}
\alias{rev2irrev}
\alias{irrev2rev<-,modelorg_irrev-method}
\alias{irrev2rev,modelorg_irrev-method}
\alias{irrev2rev<-}
\alias{irrev2rev}
\encoding{utf8}
\title{Class for Metabolic Networks in Irreversible Format.}
\description{
Structure of the class \code{"modelorg_irrev"}. Objects of that class are
returned by the function \code{\link{mod2irrev}}.
}
\section{Objects from the Class}{
Objects can be created by calls of the function \code{modelorg_irrev}:
\code{test <- modelorg_irrev(id = "foo", name = "bar")}.
}
\section{Slots}{
\describe{
\item{\code{irrev}:}{
Object of class \code{"logical"} indicating if the model is in
irreversible format.
}
\item{\code{matchrev}:}{
Object of class \code{"integer"} matching of forward and backward
reactions of a reversible reaction.
}
\item{\code{rev2irrev}:}{
Object of class \code{"matrix"} containing the reaction id's of the
corresponding reactions in irreversible format.
}
\item{\code{irrev2rev}:}{
Object of class \code{"integer"} containing the reaction id's of the
corresponding reaction in reversible format.
}
}
}
\section{Extends}{
Class \code{"\linkS4class{modelorg}"}, directly.
}
\section{Methods}{
\describe{
\item{\code{irrev<-}:}{
\code{signature(object = "modelorg_irrev")}: sets the \code{irrev} slot.
}
\item{\code{irrev}:}{
\code{signature(object = "modelorg_irrev")}: gets the \code{irrev} slot.
}
\item{\code{matchrev<-}:}{
\code{signature(object = "modelorg_irrev")}: sets the \code{matchrev}
slot.
}
\item{\code{matchrev}:}{
\code{signature(object = "modelorg_irrev")}: gets the \code{matchrev}
slot.
}
\item{\code{rev2irrev<-}:}{
\code{signature(object = "modelorg_irrev")}: sets the \code{rev2irrev}
slot.
}
\item{\code{rev2irrev}:}{
\code{signature(object = "modelorg_irrev")}: gets the \code{rev2irrev}
slot.
}
\item{\code{irrev2rev<-}:}{
\code{signature(object = "modelorg_irrev")}: sets the \code{irrev2rev}
slot.
}
\item{\code{irrev2rev}:}{
\code{signature(object = "modelorg_irrev")}: gets the \code{irrev2rev}
slot.
}
}
}
\author{
Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
\seealso{
\code{\linkS4class{modelorg}}
}
\examples{
showClass("modelorg_irrev")
}
\keyword{classes}