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Pathogenicity Gains and HGT Rates
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Pathogenicity Gains and HGT Rates
Commits
5aecfef0
Commit
5aecfef0
authored
5 months ago
by
Swastik Mishra
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add mamba env yml file
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mamba_packages.yml
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5aecfef0
name
:
hgt_analyses
channels
:
-
etetoolkit
-
bioconda
-
conda-forge
dependencies
:
-
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platformdirs=4.3.6=pyhd8ed1ab_0
-
plotly=5.24.1=pyhd8ed1ab_0
-
pluggy=1.5.0=pyhd8ed1ab_0
-
ply=3.11=pyhd8ed1ab_2
-
pooch=1.8.2=pyhd8ed1ab_0
-
prodigal=2.6.3=h031d066_8
-
prometheus_client=0.21.0=pyhd8ed1ab_0
-
prompt-toolkit=3.0.48=pyha770c72_0
-
prompt_toolkit=3.0.48=hd8ed1ab_0
-
psutil=6.0.0=py312h66e93f0_1
-
pthread-stubs=0.4=hb9d3cd8_1002
-
ptyprocess=0.7.0=pyhd3deb0d_0
-
pulseaudio-client=17.0=hb77b528_0
-
pure_eval=0.2.3=pyhd8ed1ab_0
-
pyarrow=16.1.0=py312h9cebb41_2
-
pyarrow-core=16.1.0=py312h0983c49_2_cpu
-
pyarrow-hotfix=0.6=pyhd8ed1ab_0
-
pycparser=2.22=pyhd8ed1ab_0
-
pydot=3.0.1=py312h7900ff3_1
-
pyfaidx=0.8.1.1=pyhdfd78af_0
-
pygments=2.18.0=pyhd8ed1ab_0
-
pygraphviz=1.13=py312h4a1d8a7_1
-
pyparsing=3.2.0=pyhd8ed1ab_0
-
pyqt=5.15.9=py312h949fe66_5
-
pyqt5-sip=12.12.2=py312h30efb56_5
-
pyrsistent=0.20.0=py312h66e93f0_1
-
pysocks=1.7.1=pyha2e5f31_6
-
pytaxonkit=0.8=pyhdfd78af_0
-
pytest=8.3.3=pyhd8ed1ab_0
-
python=3.12.3=hab00c5b_0_cpython
-
python-dateutil=2.9.0=pyhd8ed1ab_0
-
python-fastjsonschema=2.20.0=pyhd8ed1ab_0
-
python-json-logger=2.0.7=pyhd8ed1ab_0
-
python-kaleido=0.2.1=pyhd8ed1ab_0
-
python-tzdata=2024.2=pyhd8ed1ab_0
-
python-wget=3.2=py_0
-
python_abi=3.12=5_cp312
-
pytz=2024.1=pyhd8ed1ab_0
-
pyvcf3=1.0.3=pyhdfd78af_0
-
pyyaml=6.0.2=py312h66e93f0_1
-
pyzmq=26.2.0=py312hbf22597_3
-
qhull=2020.2=h434a139_5
-
qt=5.15.8=hf11cfaa_0
-
qt-main=5.15.8=hc9dc06e_21
-
qt-webengine=5.15.8=h3e791b3_6
-
qtconsole=5.6.0=pyhd8ed1ab_0
-
qtconsole-base=5.6.0=pyha770c72_0
-
qtpy=2.4.1=pyhd8ed1ab_0
-
rdma-core=54.0=h5888daf_0
-
re2=2023.09.01=h7f4b329_2
-
readline=8.2=h8228510_1
-
referencing=0.35.1=pyhd8ed1ab_0
-
requests=2.32.3=pyhd8ed1ab_0
-
rfc3339-validator=0.1.4=pyhd8ed1ab_0
-
rfc3986-validator=0.1.1=pyh9f0ad1d_0
-
rich=13.9.2=pyhd8ed1ab_0
-
rpds-py=0.20.0=py312h12e396e_1
-
s2n=1.4.15=he19d79f_0
-
scikit-learn=1.5.2=py312h7a48858_1
-
scipy=1.14.1=py312h7d485d2_0
-
seaborn=0.13.2=hd8ed1ab_2
-
seaborn-base=0.13.2=pyhd8ed1ab_2
-
send2trash=1.8.3=pyh0d859eb_0
-
setuptools=75.1.0=pyhd8ed1ab_0
-
simplejson=3.19.3=py312h66e93f0_1
-
sip=6.7.12=py312h30efb56_0
-
six=1.16.0=pyh6c4a22f_0
-
sklearn-pandas=2.2.0=pyhd8ed1ab_0
-
snappy=1.2.1=ha2e4443_0
-
sniffio=1.3.1=pyhd8ed1ab_0
-
sortedcontainers=2.4.0=pyhd8ed1ab_0
-
soupsieve=2.5=pyhd8ed1ab_1
-
sqlite=3.46.0=h6d4b2fc_0
-
stack_data=0.6.2=pyhd8ed1ab_0
-
statsmodels=0.14.4=py312hc0a28a1_0
-
tabulate=0.9.0=pyhd8ed1ab_1
-
taxonkit=0.14.2=h9ee0642_0
-
tblib=3.0.0=pyhd8ed1ab_0
-
tenacity=9.0.0=pyhd8ed1ab_0
-
terminado=0.18.1=pyh0d859eb_0
-
threadpoolctl=3.5.0=pyhc1e730c_0
-
tinycss2=1.3.0=pyhd8ed1ab_0
-
tk=8.6.13=noxft_h4845f30_101
-
toml=0.10.2=pyhd8ed1ab_0
-
tomli=2.0.2=pyhd8ed1ab_0
-
toolz=1.0.0=pyhd8ed1ab_0
-
tornado=6.4.1=py312h66e93f0_1
-
tqdm=4.66.5=pyhd8ed1ab_0
-
traitlets=5.14.3=pyhd8ed1ab_0
-
types-python-dateutil=2.9.0.20241003=pyhff2d567_0
-
typing-extensions=4.12.2=hd8ed1ab_0
-
typing_extensions=4.12.2=pyha770c72_0
-
typing_utils=0.1.0=pyhd8ed1ab_0
-
tzdata=2024b=hc8b5060_0
-
ucx=1.16.0=h209287a_5
-
uri-template=1.3.0=pyhd8ed1ab_0
-
urllib3=2.2.3=pyhd8ed1ab_0
-
wcwidth=0.2.13=pyhd8ed1ab_0
-
webcolors=24.8.0=pyhd8ed1ab_0
-
webencodings=0.5.1=pyhd8ed1ab_2
-
websocket-client=1.8.0=pyhd8ed1ab_0
-
wget=1.21.4=hda4d442_0
-
wheel=0.44.0=pyhd8ed1ab_0
-
widgetsnbextension=4.0.13=pyhd8ed1ab_0
-
xarray=2024.9.0=pyhd8ed1ab_1
-
xcb-util=0.4.0=hd590300_1
-
xcb-util-image=0.4.0=h8ee46fc_1
-
xcb-util-keysyms=0.4.0=h8ee46fc_1
-
xcb-util-renderutil=0.3.9=hd590300_1
-
xcb-util-wm=0.4.1=h8ee46fc_1
-
xkeyboard-config=2.42=h4ab18f5_0
-
xlsxwriter=3.2.0=pyhd8ed1ab_0
-
xorg-compositeproto=0.4.2=hb9d3cd8_1002
-
xorg-damageproto=1.2.1=hb9d3cd8_1003
-
xorg-fixesproto=5.0=hb9d3cd8_1003
-
xorg-inputproto=2.3.2=hb9d3cd8_1003
-
xorg-kbproto=1.0.7=hb9d3cd8_1003
-
xorg-libice=1.1.1=hb9d3cd8_1
-
xorg-libsm=1.2.4=he73a12e_1
-
xorg-libx11=1.8.9=h8ee46fc_0
-
xorg-libxau=1.0.11=hb9d3cd8_1
-
xorg-libxcomposite=0.4.6=h0b41bf4_1
-
xorg-libxdamage=1.1.5=h7f98852_1
-
xorg-libxdmcp=1.1.5=hb9d3cd8_0
-
xorg-libxext=1.3.4=h0b41bf4_2
-
xorg-libxfixes=5.0.3=h7f98852_1004
-
xorg-libxi=1.7.10=h4bc722e_1
-
xorg-libxrandr=1.5.2=h7f98852_1
-
xorg-libxrender=0.9.11=hd590300_0
-
xorg-libxtst=1.2.5=h4bc722e_0
-
xorg-randrproto=1.5.0=hb9d3cd8_1002
-
xorg-recordproto=1.14.2=hb9d3cd8_1003
-
xorg-renderproto=0.11.1=hb9d3cd8_1003
-
xorg-util-macros=1.20.1=hb9d3cd8_0
-
xorg-xextproto=7.3.0=hb9d3cd8_1004
-
xorg-xf86vidmodeproto=2.3.1=hb9d3cd8_1003
-
xorg-xproto=7.0.31=hb9d3cd8_1008
-
xyzservices=2024.9.0=pyhd8ed1ab_0
-
xz=5.2.6=h166bdaf_0
-
yaml=0.2.5=h7f98852_2
-
zeromq=4.3.5=h3b0a872_6
-
zict=3.0.0=pyhd8ed1ab_0
-
zipp=3.20.2=pyhd8ed1ab_0
-
zlib=1.2.13=h4ab18f5_6
-
zstandard=0.23.0=py312hef9b889_1
-
zstd=1.5.6=ha6fb4c9_0
-
pip
:
-
git-filter-repo==2.38.0
-
pyvolve==1.1.0
-
xlsx2csv==0.8.3
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