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Commit 20092aea authored by Swastik Mishra's avatar Swastik Mishra
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update mamba env yml files

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mamba_packages.yml → hgt_analyses.yml
+ 21
− 6
View file @ 20092aea
......@@ -15,6 +15,7 @@ dependencies:
- argon2-cffi-bindings=21.2.0=py312h66e93f0_5
- aria2=1.37.0=h347180d_1
- arrow=1.3.0=pyhd8ed1ab_0
- asteval=1.0.6=pyhd8ed1ab_0
- asttokens=2.4.1=pyhd8ed1ab_0
- async-lru=2.0.4=pyhd8ed1ab_0
- atk-1.0=2.38.0=h04ea711_2
......@@ -42,21 +43,23 @@ dependencies:
- blast=2.15.0=pl5321h6f7f691_1
- bleach=6.1.0=pyhd8ed1ab_0
- bokeh=3.5.2=pyhd8ed1ab_0
- brokenaxes=0.4.2=pyhd8ed1ab_0
- brotli=1.1.0=hb9d3cd8_2
- brotli-bin=1.1.0=hb9d3cd8_2
- brotli-python=1.1.0=py312h2ec8cdc_2
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.34.1=heb4867d_0
- ca-certificates=2024.8.30=hbcca054_0
- ca-certificates=2025.1.31=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.18.0=h3faef2a_0
- certifi=2024.8.30=pyhd8ed1ab_0
- certifi=2025.1.31=pyhd8ed1ab_0
- cffi=1.17.1=py312h06ac9bb_0
- charset-normalizer=3.4.0=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- cloudpickle=3.0.0=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- colorcet=3.1.0=pyhd8ed1ab_1
- comm=0.2.2=pyhd8ed1ab_0
- contourpy=1.3.0=py312h68727a3_2
- curl=8.8.0=he654da7_1
......@@ -65,12 +68,14 @@ dependencies:
- dask=2024.9.1=pyhd8ed1ab_0
- dask-core=2024.9.1=pyhd8ed1ab_0
- dask-expr=1.1.15=pyhd8ed1ab_0
- datashader=0.17.0=pyhd8ed1ab_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.8.7=py312h2ec8cdc_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- dendropy=4.6.1=pyhdfd78af_0
- diamond=2.1.9=h43eeafb_0
- dill=0.3.9=pyhd8ed1ab_1
- distributed=2024.9.1=pyhd8ed1ab_0
- docopt=0.6.2=py_1
- easel=0.49=h031d066_0
......@@ -96,6 +101,7 @@ dependencies:
- fribidi=1.0.10=h36c2ea0_0
- fsspec=2024.9.0=pyhff2d567_0
- ftpretty=0.4.0=pyhd8ed1ab_0
- future=1.0.0=pyhd8ed1ab_2
- gawk=5.3.1=hcd3d067_0
- gdk-pixbuf=2.42.12=hb9ae30d_0
- gettext=0.22.5=he02047a_3
......@@ -211,6 +217,7 @@ dependencies:
- libidn2=2.3.7=hd590300_0
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=24_linux64_openblas
- libllvm14=14.0.6=hcd5def8_4
- libllvm15=15.0.7=hb3ce162_4
- libllvm16=16.0.6=hb3ce162_3
- libllvm18=18.1.7=hb77312f_0
......@@ -250,6 +257,8 @@ dependencies:
- libxslt=1.1.39=h76b75d6_0
- libzlib=1.2.13=h4ab18f5_6
- littleutils=0.2.4=pyhd8ed1ab_0
- llvmlite=0.42.0=py312hb06c811_1
- lmfit=1.3.3=pyhd8ed1ab_0
- locket=1.0.0=pyhd8ed1ab_0
- loguru=0.7.2=py312h7900ff3_2
- lxml=5.2.2=py312hb90d8a5_0
......@@ -268,6 +277,7 @@ dependencies:
- mpi=1.0=openmpi
- mpmath=1.3.0=pyhd8ed1ab_0
- msgpack-python=1.1.0=py312h68727a3_0
- multipledispatch=0.6.0=pyhd8ed1ab_1
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.3.0=hf1915f5_4
- mysql-libs=8.3.0=hca2cd23_4
......@@ -287,11 +297,12 @@ dependencies:
- notebook-shim=0.2.4=pyhd8ed1ab_0
- nspr=4.35=h27087fc_0
- nss=3.100=hca3bf56_0
- numpy=2.1.2=py312h58c1407_0
- numba=0.59.1=py312hacefee8_0
- numpy=1.26.4=py312heda63a1_0
- openjpeg=2.5.2=h488ebb8_0
- openmpi=4.1.6=hc5af2df_101
- openpyxl=3.1.5=py312h710cb58_1
- openssl=3.4.0=hb9d3cd8_0
- openssl=3.4.1=h7b32b05_0
- orc=2.0.1=h17fec99_1
- outdated=0.2.2=pyhd8ed1ab_1
- overrides=7.7.0=pyhd8ed1ab_0
......@@ -301,6 +312,7 @@ dependencies:
- pandoc=3.5=ha770c72_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- pango=1.54.0=h84a9a3c_0
- param=2.2.0=pyhd8ed1ab_0
- parso=0.8.4=pyhd8ed1ab_0
- partd=1.4.2=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
......@@ -348,10 +360,11 @@ dependencies:
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio-client=17.0=hb77b528_0
- pure_eval=0.2.3=pyhd8ed1ab_0
- pyarrow=16.1.0=py312h9cebb41_2
- pyarrow-core=16.1.0=py312h0983c49_2_cpu
- pyarrow=16.1.0=py312h8da182e_1
- pyarrow-core=16.1.0=py312h5429d62_1_cpu
- pyarrow-hotfix=0.6=pyhd8ed1ab_0
- pycparser=2.22=pyhd8ed1ab_0
- pyct=0.5.0=pyhd8ed1ab_1
- pydot=3.0.1=py312h7900ff3_1
- pyfaidx=0.8.1.1=pyhdfd78af_0
- pygments=2.18.0=pyhd8ed1ab_0
......@@ -398,6 +411,7 @@ dependencies:
- seaborn-base=0.13.2=pyhd8ed1ab_2
- send2trash=1.8.3=pyh0d859eb_0
- setuptools=75.1.0=pyhd8ed1ab_0
- setuptools-scm=8.2.1=pyhd8ed1ab_0
- simplejson=3.19.3=py312h66e93f0_1
- sip=6.7.12=py312h30efb56_0
- six=1.16.0=pyh6c4a22f_0
......@@ -429,6 +443,7 @@ dependencies:
- typing_utils=0.1.0=pyhd8ed1ab_0
- tzdata=2024b=hc8b5060_0
- ucx=1.16.0=h209287a_5
- uncertainties=3.2.2=pyhd8ed1ab_2
- uri-template=1.3.0=pyhd8ed1ab_0
- urllib3=2.2.3=pyhd8ed1ab_0
- wcwidth=0.2.13=pyhd8ed1ab_0
......
hgt_analyses_py2.yml 0 → 100644
+ 119
− 0
View file @ 20092aea
name: hgt_analyses_py2
channels:
- plotly
- bioconda
- etetoolkit
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- argtable2=2.13=0
- ca-certificates=2024.2.2=hbcca054_0
- cairo=1.14.6=4
- certifi=2019.11.28=py27h8c360ce_1
- clustalo=1.2.4=hdbdd923_8
- curl=7.64.0=h646f8bb_0
- dendropy=4.6.0=pyh7cba7a3_0
- dialigntx=1.0.2=hdce4c0c_0
- ete3=3.1.1=pyh24bf2e0_1
- ete_toolchain=3.0.0=h73706c9_0
- expat=2.6.2=h59595ed_0
- fasttree=2.1.11=h031d066_3
- fontconfig=2.12.1=4
- freetype=2.7=1
- gettext=0.22.5=h59595ed_2
- gettext-tools=0.22.5=h59595ed_2
- glib=2.51.4=0
- graphite2=1.3.13=h59595ed_1003
- harfbuzz=1.4.3=0
- icu=58.2=hf484d3e_1000
- iqtree=1.5.5=he941832_2
- jpeg=9e=h0b41bf4_3
- kalign=2.03=h29c49b8_0
- krb5=1.16.3=hc83ff2d_1000
- ld_impl_linux-64=2.40=h55db66e_0
- libasprintf=0.22.5=h661eb56_2
- libasprintf-devel=0.22.5=h661eb56_2
- libblas=3.9.0=8_openblas
- libcblas=3.9.0=8_openblas
- libcurl=7.64.0=h01ee5af_0
- libedit=3.1.20191231=he28a2e2_2
- libexpat=2.6.2=h59595ed_0
- libffi=3.2.1=he1b5a44_1007
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=13.2.0=h77fa898_6
- libgettextpo=0.22.5=h59595ed_2
- libgettextpo-devel=0.22.5=h59595ed_2
- libgfortran-ng=7.5.0=h14aa051_20
- libgfortran4=7.5.0=h14aa051_20
- libgomp=13.2.0=h77fa898_6
- libiconv=1.17=hd590300_2
- liblapack=3.9.0=8_openblas
- libopenblas=0.3.12=pthreads_hb3c22a3_1
- libpng=1.6.43=h2797004_0
- libsqlite=3.45.3=h2797004_0
- libssh2=1.8.0=h1ad7b7a_1003
- libstdcxx-ng=13.2.0=hc0a3c3a_6
- libtiff=4.0.10=hc3755c2_1005
- libuuid=2.38.1=h0b41bf4_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.9.9=h13577e0_2
- libxslt=1.1.32=hae48121_1003
- libzlib=1.2.13=hd590300_5
- lxml=4.4.1=py27h7ec2d77_0
- lz4-c=1.9.3=h9c3ff4c_1
- mafft=6.861=h7f9ae3c_0
- muscle=3.8.31=0
- ncurses=6.4.20240210=h59595ed_0
- numpy=1.16.5=py27h95a1406_0
- openblas=0.3.12=pthreads_h43bd3aa_1
- openssl=1.0.2u=h516909a_0
- paml=4.8=h48adae2_0
- pandas=0.24.2=py27hb3f55d8_0
- pango=1.40.4=0
- patsy=0.5.1=py_0
- pcre=8.45=h9c3ff4c_0
- perl=5.32.1=7_hd590300_perl5
- phylobayes=4.1c=hac87e47_0
- phyml=20160115.patched=hee5dff1_0
- pip=20.1.1=pyh9f0ad1d_0
- pixman=0.34.0=h14c3975_1003
- plotly=4.14.3=py_0
- pmodeltest=1.4=py27hb4d0d57_0
- pthread-stubs=0.4=h36c2ea0_1001
- pyqt=4.11.4=py27_3
- python=2.7.15=h938d71a_1006
- python-dateutil=2.8.1=py_0
- python_abi=2.7=1_cp27mu
- pytz=2020.1=pyh9f0ad1d_0
- qt=4.8.7=ha8c56c7_9
- raxml=8.2.11=h6db2ed4_0
- readline=7.0=hf8c457e_1001
- retrying=1.3.3=py_2
- scipy=1.2.1=py27h921218d_2
- setuptools=44.0.0=py27_0
- sip=4.18=py27_1
- six=1.16.0=pyh6c4a22f_0
- slr=1.4.3=h816ab49_0
- sqlite=3.28.0=h8b20d00_0
- statsmodels=0.10.2=py27hc1659b7_0
- t_coffee=11.0.8=py27h075ee95_7
- tk=8.6.13=noxft_h4845f30_101
- trimal=1.4.1=h4ac6f70_9
- wheel=0.37.1=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.9=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-libxt=1.3.0=hd590300_1
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=hd590300_5
- zstd=1.4.9=ha95c52a_0
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