From 8345651fbd1b727f874880a16f4cfca3530e205a Mon Sep 17 00:00:00 2001
From: Philipp Spohr <spohr.philipp@web.de>
Date: Fri, 8 Sep 2017 21:36:28 +0200
Subject: [PATCH] Improved style handling
---
.../de/hhu/ba/yoshikoWrapper/CyActivator.java | 22 +++--
.../de/hhu/ba/yoshikoWrapper/core/CyCore.java | 10 +--
.../yoshikoWrapper/cytoUtil/StyleManager.java | 88 +++++++++++++++++++
.../graphModel/YoshikoCluster.java | 66 +++++++-------
.../graphModel/YoshikoSolution.java | 88 +++++++------------
5 files changed, 167 insertions(+), 107 deletions(-)
create mode 100644 src/main/java/de/hhu/ba/yoshikoWrapper/cytoUtil/StyleManager.java
diff --git a/src/main/java/de/hhu/ba/yoshikoWrapper/CyActivator.java b/src/main/java/de/hhu/ba/yoshikoWrapper/CyActivator.java
index 149563f..cb54e91 100644
--- a/src/main/java/de/hhu/ba/yoshikoWrapper/CyActivator.java
+++ b/src/main/java/de/hhu/ba/yoshikoWrapper/CyActivator.java
@@ -1,16 +1,16 @@
/*******************************************************************************
* Copyright (C) 2017 Philipp Spohr
- *
+ *
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
- *
+ *
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
- *
+ *
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
@@ -38,7 +38,6 @@ import org.cytoscape.service.util.AbstractCyActivator;
import org.cytoscape.service.util.CyServiceRegistrar;
import org.cytoscape.session.events.SessionLoadedListener;
import org.cytoscape.task.create.CloneNetworkTaskFactory;
-import org.cytoscape.task.visualize.ApplyVisualStyleTaskFactory;
import org.cytoscape.view.model.CyNetworkViewFactory;
import org.cytoscape.view.layout.CyLayoutAlgorithmManager;
import org.cytoscape.view.model.CyNetworkViewManager;
@@ -68,7 +67,7 @@ public class CyActivator extends AbstractCyActivator {
public CyActivator() {
super();
}
-
+
@Override
public void start(BundleContext context) throws Exception {
//Initialize cytoscape configuration system
@@ -77,9 +76,9 @@ public class CyActivator extends AbstractCyActivator {
Properties propsReaderServiceProps = new Properties();
propsReaderServiceProps.setProperty("cyPropertyName", "yoshiko.props");
registerAllServices(context,cm,propsReaderServiceProps);
-
+
//Create symbolic links to give other classes access to Cytoscape Services
- CyCore.cy = getService(context, CyApplicationManager.class);
+ CyCore.cy = getService(context, CyApplicationManager.class);
CyCore.dialogTaskManager = getService(context, DialogTaskManager.class);
CyCore.registrar = getService(context, CyServiceRegistrar.class);
CyCore.cm = cm;
@@ -93,14 +92,13 @@ public class CyActivator extends AbstractCyActivator {
CyCore.visualStyleFactory = getService(context,VisualStyleFactory.class);
CyCore.continuousMappingFactory = getService(context,VisualMappingFunctionFactory.class, "(mapping.type=continuous)");
CyCore.rootNetworkManager = getService(context,CyRootNetworkManager.class);
- CyCore.applyVisualStyleTaskFactory = getService(context,ApplyVisualStyleTaskFactory.class);
//Not sure how to correctly infer arguments here
CyCore.renderingEngineFactory = getService(context,RenderingEngineFactory.class);
CyCore.cloneNetworkTaskFactory = getService(context,CloneNetworkTaskFactory.class);
//Store a reference to the Version
YoshUtil.version = context.getBundle().getVersion();
-
+
//Set language according to settings -> Default to enUS
LocalizationManager.switchLanguage(cm.getProperties().getProperty("locale", "enUS"));
@@ -111,12 +109,12 @@ public class CyActivator extends AbstractCyActivator {
YoshikoLoader.loadLibrary(pathToYosh);
}
}
-
+
//Initialize and register main panel
MainPanel mainPanel = new MainPanel();
registerService(context,mainPanel,CytoPanelComponent.class, new Properties());
-
+
//Listener for Network-Changes -> Updating possible columns for mapping
NetChangeListener netChangeListener = new NetChangeListener(mainPanel.getColumnMapper());
registerService(context,netChangeListener, AddedEdgesListener.class, new Properties());
@@ -125,7 +123,7 @@ public class CyActivator extends AbstractCyActivator {
registerService(context,netChangeListener, ColumnDeletedListener.class, new Properties());
registerService(context,netChangeListener, SessionLoadedListener.class, new Properties());
registerService(context,netChangeListener, SetCurrentNetworkListener.class, new Properties());
-
+
//Show Startup-Hint
HintManager.showMappingHint(Hint.FIRST_START);
diff --git a/src/main/java/de/hhu/ba/yoshikoWrapper/core/CyCore.java b/src/main/java/de/hhu/ba/yoshikoWrapper/core/CyCore.java
index 8c6462b..5276bab 100644
--- a/src/main/java/de/hhu/ba/yoshikoWrapper/core/CyCore.java
+++ b/src/main/java/de/hhu/ba/yoshikoWrapper/core/CyCore.java
@@ -1,16 +1,16 @@
/*******************************************************************************
* Copyright (C) 2017 Philipp Spohr
- *
+ *
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
- *
+ *
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
- *
+ *
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
@@ -29,7 +29,6 @@ import org.cytoscape.model.CyNetworkManager;
import org.cytoscape.model.subnetwork.CyRootNetworkManager;
import org.cytoscape.service.util.CyServiceRegistrar;
import org.cytoscape.task.create.CloneNetworkTaskFactory;
-import org.cytoscape.task.visualize.ApplyVisualStyleTaskFactory;
import org.cytoscape.view.layout.CyLayoutAlgorithmManager;
import org.cytoscape.view.model.CyNetworkViewFactory;
import org.cytoscape.view.model.CyNetworkViewManager;
@@ -61,11 +60,10 @@ public class CyCore {
public static VisualStyleFactory visualStyleFactory;
public static VisualMappingFunctionFactory continuousMappingFactory;
public static CyRootNetworkManager rootNetworkManager;
- public static ApplyVisualStyleTaskFactory applyVisualStyleTaskFactory;
public static RenderingEngineFactory<CyNetwork> renderingEngineFactory;
public static CloneNetworkTaskFactory cloneNetworkTaskFactory;
//
-
+
//Convenience
public static String getConfig(String key) {
return cm.getProperties().getProperty(key);
diff --git a/src/main/java/de/hhu/ba/yoshikoWrapper/cytoUtil/StyleManager.java b/src/main/java/de/hhu/ba/yoshikoWrapper/cytoUtil/StyleManager.java
new file mode 100644
index 0000000..509926c
--- /dev/null
+++ b/src/main/java/de/hhu/ba/yoshikoWrapper/cytoUtil/StyleManager.java
@@ -0,0 +1,88 @@
+package de.hhu.ba.yoshikoWrapper.cytoUtil;
+
+import java.util.List;
+
+import org.cytoscape.view.model.CyNetworkView;
+import org.cytoscape.view.presentation.property.BasicVisualLexicon;
+import org.cytoscape.view.vizmap.VisualStyle;
+import org.cytoscape.view.vizmap.mappings.BoundaryRangeValues;
+import org.cytoscape.view.vizmap.mappings.ContinuousMapping;
+
+import de.hhu.ba.yoshikoWrapper.core.CyCore;
+
+public class StyleManager {
+
+ public static final String CLUSTERSIZE_COLUMN_NAME = "clusterSize";
+ public static final String EDGESTRENGTH_COLUMN_NAME = "edgeStrength";
+
+ public static final double MIN_EDGE_SIZE = 1.0;
+ public static final double MAX_EDGE_SIZE = 10.0;
+
+ public static final double MIN_NODE_SIZE = 5.0;
+ public static final double MAX_NODE_SIZE = 30.0;
+
+
+ private static void apply (CyNetworkView view, VisualStyle style) {
+ CyCore.visualMappingManager.setVisualStyle(style,view);
+ style.apply(view);
+ view.updateView();
+ }
+
+ public static void style(CyNetworkView view, VisualStyle style) {
+ apply(view,style);
+ }
+
+ public static void styleWithMapping(CyNetworkView view, VisualStyle style) {
+
+ style = CyCore.visualStyleFactory.createVisualStyle(style);
+
+ //Define style for solution
+ ContinuousMapping<Integer, Double> contMapNodes = (ContinuousMapping<Integer, Double>)CyCore.continuousMappingFactory.createVisualMappingFunction(
+ CLUSTERSIZE_COLUMN_NAME,
+ Integer.class,
+ BasicVisualLexicon.NODE_SIZE
+ );
+
+ ContinuousMapping<Integer, Double> contMapEdges = (ContinuousMapping<Integer, Double>)CyCore.continuousMappingFactory.createVisualMappingFunction(
+ EDGESTRENGTH_COLUMN_NAME,
+ Integer.class,
+ BasicVisualLexicon.EDGE_WIDTH
+ );
+
+ //Calculate size range and scale accordingly
+ List<Integer> sizes = view.getModel().getDefaultNodeTable().getColumn(CLUSTERSIZE_COLUMN_NAME).getValues(Integer.class);
+ int min = Integer.MAX_VALUE;
+ int max = Integer.MIN_VALUE;
+ for (Integer i : sizes) {
+ if (i < min) {
+ min = i;
+ }
+ if (i > max) {
+ max = i;
+ }
+ }
+ contMapNodes.addPoint(min, new BoundaryRangeValues<Double>(MIN_NODE_SIZE,MIN_NODE_SIZE,MIN_NODE_SIZE));
+ contMapNodes.addPoint(max, new BoundaryRangeValues<Double>(MAX_NODE_SIZE,MAX_NODE_SIZE,MAX_NODE_SIZE));
+
+ sizes = view.getModel().getDefaultEdgeTable().getColumn(EDGESTRENGTH_COLUMN_NAME).getValues(Integer.class);
+ min = Integer.MAX_VALUE;
+ max = Integer.MIN_VALUE;
+ for (Integer i : sizes) {
+ if (i < min) {
+ min = i;
+ }
+ if (i > max) {
+ max = i;
+ }
+ }
+
+ contMapEdges.addPoint(min, new BoundaryRangeValues<Double>(MIN_EDGE_SIZE,MIN_EDGE_SIZE,MIN_EDGE_SIZE));
+ contMapEdges.addPoint(max, new BoundaryRangeValues<Double>(MAX_EDGE_SIZE,MAX_EDGE_SIZE,MAX_EDGE_SIZE));
+
+ style.addVisualMappingFunction(contMapNodes);
+ style.addVisualMappingFunction(contMapEdges);
+ apply(view,style);
+
+ }
+
+}
diff --git a/src/main/java/de/hhu/ba/yoshikoWrapper/graphModel/YoshikoCluster.java b/src/main/java/de/hhu/ba/yoshikoWrapper/graphModel/YoshikoCluster.java
index 2e1f1d1..69e330a 100644
--- a/src/main/java/de/hhu/ba/yoshikoWrapper/graphModel/YoshikoCluster.java
+++ b/src/main/java/de/hhu/ba/yoshikoWrapper/graphModel/YoshikoCluster.java
@@ -1,16 +1,16 @@
/*******************************************************************************
* Copyright (C) 2017 Philipp Spohr
- *
+ *
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
- *
+ *
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
- *
+ *
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
@@ -38,7 +38,6 @@ import org.cytoscape.model.subnetwork.CySubNetwork;
import org.cytoscape.view.layout.CyLayoutAlgorithm;
import org.cytoscape.view.model.CyNetworkView;
import org.cytoscape.view.presentation.RenderingEngine;
-import org.cytoscape.view.vizmap.VisualStyle;
import org.cytoscape.work.Task;
import org.cytoscape.work.TaskIterator;
import org.cytoscape.work.TaskMonitor;
@@ -46,32 +45,33 @@ import org.slf4j.Logger;
import de.hhu.ba.yoshikoWrapper.core.CyCore;
import de.hhu.ba.yoshikoWrapper.core.LocalizationManager;
+import de.hhu.ba.yoshikoWrapper.cytoUtil.StyleManager;
import de.hhu.ba.yoshikoWrapper.logging.YoshikoLogger;
import static org.cytoscape.view.presentation.property.BasicVisualLexicon.NETWORK_HEIGHT;
import static org.cytoscape.view.presentation.property.BasicVisualLexicon.NETWORK_WIDTH;
public class YoshikoCluster {
-
-
+
+
private final long id;
-
+
private ArrayList<CyNode> nodes;
private CySubNetwork net;
-
+
//SYMBOLIC LINKS
private final CyNetwork originalGraph;
private Logger logger = YoshikoLogger.getInstance().getLogger();
-
-
+
+
public YoshikoCluster(long id, CyNetwork originalGraph) {
this.id = id;
this.originalGraph = originalGraph;
- this.nodes = new ArrayList<CyNode>();
+ this.nodes = new ArrayList<CyNode>();
}
-
+
private void createSubNetwork() {
-
+
if (net == null) {
CyRootNetwork originalGraphAsRoot = CyCore.rootNetworkManager.getRootNetwork(originalGraph);
@@ -89,11 +89,11 @@ public class YoshikoCluster {
CySubNetwork subnet = originalGraphAsRoot.addSubNetwork(nodes ,inducedEdges);
subnet.getRow(subnet).set(CyNetwork.NAME, LocalizationManager.get("cluster")+" "+(id+1));
-
- net = subnet; //Save for further reference
+
+ net = subnet; //Save for further reference
}
}
-
+
/**
* Attempt to select the nodes belonging to this cluster in the original Graph given that they still exist
*/
@@ -112,41 +112,39 @@ public class YoshikoCluster {
logger.warn("The graph doesn't exist anymore, can't highlight nodes!");
}
}
-
+
public void generateImage(JLabel label, int width, int height) {
-
+
if (net == null) {
createSubNetwork();
}
-
+
final CyNetworkView view = CyCore.networkViewFactory.createNetworkView(net);
-
+
//layout cluster
final CyLayoutAlgorithm layout = CyCore.layoutAlgorithmManager.getDefaultLayout();
final TaskIterator createLayout = layout.createTaskIterator(
- view,
- layout.getDefaultLayoutContext(),
+ view,
+ layout.getDefaultLayoutContext(),
CyLayoutAlgorithm.ALL_NODE_VIEWS,
null
);
-
+
createLayout.append(
new Task() {
@Override
public void run(TaskMonitor taskMonitor) throws Exception {
taskMonitor.setStatusMessage("Generating cluster view for C:"+id);
-
- VisualStyle vs= CyCore.visualStyleFactory.createVisualStyle(CyCore.visualMappingManager.getCurrentVisualStyle());
- CyCore.visualMappingManager.setVisualStyle(vs, view);
- vs.apply(view);
+
+ StyleManager.style(view, CyCore.visualMappingManager.getCurrentVisualStyle());
view.setVisualProperty(NETWORK_WIDTH, new Double(width));
view.setVisualProperty(NETWORK_HEIGHT, new Double(height));
view.fitContent();
view.updateView();
-
+
RenderingEngine<CyNetwork> renderingEngine = CyCore.renderingEngineFactory.createRenderingEngine(label, view);
SwingUtilities.invokeLater(new Runnable() {
@@ -154,28 +152,28 @@ public class YoshikoCluster {
public void run() {
Image img = renderingEngine.createImage(width,height);
label.setIcon(new ImageIcon(img));
-
+
renderingEngine.dispose();
view.dispose();
}
-
+
});
-
+
}
@Override
public void cancel() {
//Nothing to do as GC is handled by JAVA
}
-
+
}
);
-
+
CyCore.dialogTaskManager.execute(
createLayout
);
-
+
}
diff --git a/src/main/java/de/hhu/ba/yoshikoWrapper/graphModel/YoshikoSolution.java b/src/main/java/de/hhu/ba/yoshikoWrapper/graphModel/YoshikoSolution.java
index ed22279..62081db 100644
--- a/src/main/java/de/hhu/ba/yoshikoWrapper/graphModel/YoshikoSolution.java
+++ b/src/main/java/de/hhu/ba/yoshikoWrapper/graphModel/YoshikoSolution.java
@@ -1,16 +1,16 @@
/*******************************************************************************
* Copyright (C) 2017 Philipp Spohr
- *
+ *
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
- *
+ *
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
- *
+ *
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
@@ -32,24 +32,22 @@ import org.cytoscape.model.CyEdge.Type;
import org.cytoscape.model.subnetwork.CySubNetwork;
import org.cytoscape.view.layout.CyLayoutAlgorithm;
import org.cytoscape.view.model.CyNetworkView;
-import org.cytoscape.view.presentation.property.BasicVisualLexicon;
-import org.cytoscape.view.vizmap.VisualStyle;
-import org.cytoscape.view.vizmap.mappings.ContinuousMapping;
import de.hhu.ba.yoshikoWrapper.core.CyCore;
import de.hhu.ba.yoshikoWrapper.core.LocalizationManager;
+import de.hhu.ba.yoshikoWrapper.cytoUtil.StyleManager;
public class YoshikoSolution {
-
+
/**
* The original Graph from which the solution was generated.
* NOTE: This can be destroyed or modified during runtime while the solution still exists and may become invalid
*/
private CyNetwork originalGraph;
-
+
public ArrayList<YoshikoCluster> cluster;
public int id;
-
+
public YoshikoSolution(CyNetwork originalGraph) {
cluster = new ArrayList<YoshikoCluster>();
this.originalGraph = originalGraph;
@@ -60,27 +58,26 @@ public class YoshikoSolution {
* The nodes are linked to subgraphs representing the cluster and also their size is scaled relative to cluster size
*/
public void exportMetaGraph() {
-
+
CyNetwork metaGraph = CyCore.networkFactory.createNetwork();
-
+
metaGraph.getRow(metaGraph).set(CyNetwork.NAME, LocalizationManager.get("metaGraph"));
-
+
metaGraph.getDefaultNodeTable().createColumn("clusterSize", Integer.class, false);
metaGraph.getDefaultEdgeTable().createColumn("edgeStrength", Integer.class, false);
CyLayoutAlgorithm layout = CyCore.layoutAlgorithmManager.getDefaultLayout();
-
+
//Map Cluster to Nodes for further reference
HashMap<YoshikoCluster,CyNode> map = new HashMap<YoshikoCluster,CyNode>();
-
-
+
+
//Add nodes
for (YoshikoCluster c: cluster) {
-
- VisualStyle vs= CyCore.visualStyleFactory.createVisualStyle(CyCore.visualMappingManager.getCurrentVisualStyle());
-
+
+
CyNode clusterNode = metaGraph.addNode();
CySubNetwork subnet = c.getSubNetwork();
CyCore.networkManager.addNetwork(subnet);
@@ -90,22 +87,22 @@ public class YoshikoSolution {
//layout cluster
CyCore.dialogTaskManager.execute(
layout.createTaskIterator(
- subnetView,
- layout.getDefaultLayoutContext(),
+ subnetView,
+ layout.getDefaultLayoutContext(),
CyLayoutAlgorithm.ALL_NODE_VIEWS,
null
)
);
- CyCore.visualMappingManager.setVisualStyle(vs, subnetView);
- vs.apply(subnetView);
- subnetView.updateView();
+
+ StyleManager.style(subnetView,CyCore.visualMappingManager.getCurrentVisualStyle());
+
clusterNode.setNetworkPointer(subnet);
//Set node attributes
metaGraph.getRow(clusterNode).set("name", LocalizationManager.get("cluster")+" "+c.getID());
- metaGraph.getRow(clusterNode).set("clusterSize",c.getSize());
+ metaGraph.getRow(clusterNode).set(StyleManager.CLUSTERSIZE_COLUMN_NAME,c.getSize());
map.put(c, clusterNode);
}
-
+
//Add edges (O(|C|^2*|V|^2) can maybe be improved? //TODO
for (YoshikoCluster c1:cluster) {
for (YoshikoCluster c2:cluster) {
@@ -120,12 +117,12 @@ public class YoshikoSolution {
if (originalGraph.containsEdge(c1n, c2n) || originalGraph.containsEdge(c2n, c1n)) {
if (!metaGraph.containsEdge(map.get(c1), map.get(c2))){
CyEdge edge = metaGraph.addEdge(map.get(c1), map.get(c2), false);
- metaGraph.getRow(edge).set("edgeStrength",1);
+ metaGraph.getRow(edge).set(StyleManager.EDGESTRENGTH_COLUMN_NAME,1);
}
else {
CyEdge edge = metaGraph.getConnectingEdgeList(map.get(c1), map.get(c2), Type.ANY).get(0);
- metaGraph.getRow(edge).set("edgeStrength",
- metaGraph.getRow(edge).get("edgeStrength", Integer.class)+1
+ metaGraph.getRow(edge).set(StyleManager.EDGESTRENGTH_COLUMN_NAME,
+ metaGraph.getRow(edge).get(StyleManager.EDGESTRENGTH_COLUMN_NAME, Integer.class)+1
);
}
}
@@ -133,47 +130,28 @@ public class YoshikoSolution {
}
}
}
-
+
CyNetworkView view = CyCore.networkViewFactory.createNetworkView(metaGraph);
//layout solution
CyCore.dialogTaskManager.execute(
layout.createTaskIterator(
- view,
- layout.getDefaultLayoutContext(),
+ view,
+ layout.getDefaultLayoutContext(),
CyLayoutAlgorithm.ALL_NODE_VIEWS,
null
)
);
-
- VisualStyle vs= CyCore.visualStyleFactory.createVisualStyle(CyCore.visualMappingManager.getCurrentVisualStyle());
-
+
+
CyCore.networkManager.addNetwork(metaGraph);
CyCore.networkViewManager.addNetworkView(
view
);
-
- //define style for solution
- ContinuousMapping<Integer, Double> contMap = (ContinuousMapping<Integer, Double>)CyCore.continuousMappingFactory.createVisualMappingFunction(
- "clusterSize",
- Integer.class,
- BasicVisualLexicon.NODE_SIZE
- );
-
- ContinuousMapping<Integer, Double> contMapEdges = (ContinuousMapping<Integer, Double>)CyCore.continuousMappingFactory.createVisualMappingFunction(
- "edgeStrength",
- Integer.class,
- BasicVisualLexicon.EDGE_WIDTH
- );
- //Apply visual style
- CyCore.visualMappingManager.setVisualStyle(vs, view);
- vs.addVisualMappingFunction(contMap);
- vs.addVisualMappingFunction(contMapEdges);
- vs.apply(view);
- view.updateView();
-
+ StyleManager.styleWithMapping(view, CyCore.visualMappingManager.getCurrentVisualStyle());
+
CyCore.cy.setCurrentNetworkView(view);
}
-
+
}
--
GitLab