Commit 7bbdccbb authored by Jan Hoeckesfeld's avatar Jan Hoeckesfeld
Browse files

rearranged gitignore

parent b41f99d9
#IDE
.vs/
.idea/*
# data
out/
/data/*
config.yaml
.snakemake/
.idea/*
__pycache__/
benchmarks/
logs/
report/
clusterLogs/
.env
\ No newline at end of file
# environment
.env
config.yaml
.snakemake/
# singularity
*.simg
\ No newline at end of file
......@@ -4,6 +4,7 @@
# DOCKER_HUB
# PROJECT_DIR
# FILE_SERVER
# CKMERTOOLS_GIT_FOLDER
if test -f ".env";
......@@ -11,6 +12,10 @@ then
export $(cat .env | xargs)
fi
commitsha=$(git --git-dir ${CKMERTOOLS_GIT_FOLDER}/.git rev-parse HEAD)
echo "${commitsha}"
sed -i -E "/^ git checkout / s/(.{15}).{40}/\ git checkout $commitsha/" "${DOCKERFILE}/Dockerfile"
sum=$(echo -n ${DOCKER_HUB} | md5sum | awk '{print $1}')
docker image build -t local/ckmertools_docker:latest "${DOCKERFILE}"
singularity build "${sum}.simg" docker-daemon://local/ckmertools_docker:latest
......
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