Commit 4b8b9ac9 authored by Jan Hoeckesfeld's avatar Jan Hoeckesfeld
Browse files

changed resources

parent f2382db3
......@@ -13,7 +13,7 @@ rule estimateKmerCoverage:
cpus = '1', #TODO: This could in theory be sped up significantly using a shared cache and multithreading
gpus = '0',
mem = '6G',
walltime = '00:45:00'
walltime = '00:10:00'
log:
'logs/' + config['input_folder'] + '/kmers/{kmer}/{id}/estimateKmerCoverage.log'
benchmark:
......
......@@ -82,9 +82,9 @@ rule bwa:
params:
#cluster execution
cpus = '1',
mem = '4G',
mem = '1G',
gpus = '0',
walltime = '00:30:00'
walltime = '00:10:00'
singularity:
'docker://biocontainers/bwa:v0.7.17-3-deb_cv1'
shell:
......
......@@ -126,9 +126,9 @@ rule estimateErrorRates:
params:
# cluster execution
cpus = '1',
mem = '32G',
mem = '1G',
gpus = '0',
walltime = '00:30:00'
walltime = '00:10:00'
conda:
'../envs/biopythonworkbench.yaml'
script:
......@@ -160,7 +160,7 @@ rule calcKmerStats:
k = lambda wildcards: wildcards.kmer,
# cluster execution
cpus = '1',
mem = '5G',
mem = '2G',
gpus = '0',
walltime = '00:30:00'
conda:
......
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