inputAnalysis.smk 668 Bytes
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rule detectDuplicates_repeats:
	input:
		repeats = 'data/input/'+config['spa_repeats_file']
	output:
		out = 'data/output/duplicate_repeats'
	conda:
		'envs/biopythonworkbench.yaml'
	script:
		'scripts/searchDuplicates.py'
		
rule detectDuplicates_sequences:
	input:
		repeats = 'data/auxiliary/spaSequences.fa'
	output:
		out = 'data/output/duplicate_sequences'
	conda:
		'envs/main.yaml'
	script:
		'scripts/searchDuplicates.py'
				
rule detectDuplicates_definitions:
	input:
		types = 'data/input/'+config['spa_types']
	output:
		out = 'data/output/duplicate_definitions'
	conda:
		'envs/biopythonworkbench.yaml'
	script:
		'scripts/searchDuplicateDefinitions.py'