diff --git a/networkComplexityBigg/qc/iSMenergy.R b/networkComplexityBigg/qc/iSMenergy.R new file mode 100644 index 0000000000000000000000000000000000000000..3e22ff0f5ab7f684baef9e148b7adc0ce661449d --- /dev/null +++ b/networkComplexityBigg/qc/iSMenergy.R @@ -0,0 +1,73 @@ +#!/usr/bin/Rscript + +library(sybil) + + +versions <- c("ver1", "ver1.1", "ver1.2", "ver2") +names(versions) <- versions + +data <- lapply(versions, function(v){ + print(load(paste0("../models/universalBiGG.", v, ".Rdata"))) + return(list(map=modelReactMap, uni=get(grep("^uni", ls(), value=T)))) +}) + +data <- lapply(data, function(d){ + within(d, { + ism <- rmReact(uni, setdiff(react_id(uni), map$iSM199)) + ism <- changeObjFunc(ism, "ENERGY_BOF") + }) +}) + +print(sapply(lapply(data, "[[", "ism"), optimizeProb)) + +stopifnot(setequal(met_id(data$ver1$ism), met_id(data$ver1.1$ism))) + +s1 <- S(data$ver1$ism) +s2 <- S(data$ver1.1$ism) + +s2 <- s2[match(met_id(data$ver1$ism), met_id(data$ver1.1$ism)),] + + +matching <- sapply(1:ncol(s1), function(i){ + which(sapply(1:ncol(s2), function(j){ + c1 <- s1[,i] + c2 <- s2[,j] + if(sum(c1!=0) != sum(c2!=0)){ + return(F) + } + return(all(c1 == c2)) + })) +}) + + +matchingNames <- lapply(matching, function(x) react_id(data$ver1.1$ism)[x]) +names(matchingNames) <- react_id(data$ver1$ism) + +for(i in seq(along=matching)){ + if(any(lowbnd(data$ver1$ism)[i] != lowbnd(data$ver1.1$ism)[matching[[i]]])){ + print(matchingNames[i]) + print(lowbnd(data$ver1$ism)[i]) + print(lowbnd(data$ver1.1$ism)[matching[[i]]]) + } + if(any(uppbnd(data$ver1$ism)[i] != uppbnd(data$ver1.1$ism)[matching[[i]]])){ + print(matchingNames[i]) + print(uppbnd(data$ver1$ism)[i]) + print(uppbnd(data$ver1.1$ism)[matching[[i]]]) + } + +} + + + + + + + + + + + + + + +