diff --git a/networkComplexityBigg/Data/selectBiomassTable.csv b/networkComplexityBigg/Data/selectBiomassTable.csv new file mode 100644 index 0000000000000000000000000000000000000000..61d0e013036949bb4fc26d2fc3194f41eb8253b3 --- /dev/null +++ b/networkComplexityBigg/Data/selectBiomassTable.csv @@ -0,0 +1,200 @@ +react_id,modelName,numberBiomassReactions,use,reactionName +BIOMASS_Ecoli_core_w_GAM,e_coli_core,1,X,Biomass Objective Function with GAM +BIOMASS_Ec_iAF1260_core_59p81M,iAF1260,1,X,E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate +BIOMASS_Ec_iAF1260_core_59p81M,iAF1260b,1,X,E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate +BIOMASS_Mb_30,iAF692,1,X,Mb biomass 30 +EX_gua(e)_LR,iAF987,2,,Guanine exchange +BIOMASS_Gm_GS15_WT_79p20M,iAF987,2,X,Geobacter metallireducens biomass objective function (iAF987) - WT - with 79.20 GAM estimate +BIOMASS__4,iAM_Pb448,1,X,Biomass +BIOMASS__4,iAM_Pc455,1,X,Biomass +BIOMASS__4,iAM_Pf480,1,X,Biomass +BIOMASS__4,iAM_Pk459,1,X,Biomass +BIOMASS__4,iAM_Pv461,1,X,Biomass +BIOMASS_Ec_iJO1366_WT_53p95M,iAPECO1_1312,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iAPECO1_1312,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iB21_1397,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iB21_1397,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iBWG_1329,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iBWG_1329,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,ic_1306,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,ic_1306,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS__3,iCN718,3,, +DM_biomass_c,iCN718,3,X,Demand biomass c +PROTEIN,iCN718,3,, +DM_biomass_c,iCN900,3,X,Demand biomass c +BIOMASS__5,iCN900,3,, +SOLPOOL,iCN900,3,, +BIOMASS_Ec_iJO1366_WT_53p95M,iE2348C_1286,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iE2348C_1286,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEC042_1314,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEC042_1314,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEC1344_C,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEC1344_C,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEC1349_Crooks,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEC1349_Crooks,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEC1356_BI23DE3,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEC1356_BI23DE3,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEC1364_W,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEC1364_W,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEC1368_DH5a,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEC1368_DH5a,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEC1372_W3110,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEC1372_W3110,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEC55989_1330,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEC55989_1330,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECABU_c1320,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECABU_c1320,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECB_1328,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECB_1328,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECBD_1354,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECBD_1354,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECD_1391,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECD_1391,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECDH10B_1368,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECDH10B_1368,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEcDH1_1363,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEcDH1_1363,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECDH1ME8569_1439,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECDH1ME8569_1439,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEcE24377_1341,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEcE24377_1341,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECED1_1282,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECED1_1282,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECH74115_1262,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECH74115_1262,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEcHS_1320,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEcHS_1320,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M_iECIAI1_1343,iECIAI1_1343,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M_iECIAI1_1343,iECIAI1_1343,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECIAI39_1322,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECIAI39_1322,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECNA114_1301,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECNA114_1301,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECO103_1326,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECO103_1326,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECO111_1330,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECO111_1330,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECO26_1355,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECO26_1355,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECOK1_1307,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECOK1_1307,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEcolC_1368,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEcolC_1368,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECP_1309,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECP_1309,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECs_1301,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECs_1301,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECS88_1305,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECS88_1305,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECSE_1348,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECSE_1348,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECSF_1327,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECSF_1327,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iEcSMS35_1347,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEcSMS35_1347,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECSP_1301,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECSP_1301,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECUMN_1333,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECUMN_1333,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iECW_1372,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iECW_1372,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS__2_iEK1008,iEK1008,1,X, +BIOMASS_Ec_iJO1366_WT_53p95M,iEKO11_1354,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iEKO11_1354,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iETEC_1333,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iETEC_1333,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iG2583_1286,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iG2583_1286,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Cl_DSM_WT_46p666M1,iHN637,1,X,Clostridium ljungdahlii biomass objective function (iAF1xxx) - WT - with 46.666 GAM estimate +BIOMASS_t_cruzi,iIS312,1,X, +BIOMASS_t_cruzi,iIS312_Amastigote,1,X, +BIOMASS_t_cruzi,iIS312_Epimastigote,2,X, +BIOMASS_trypo,iIS312_Epimastigote,2,, +BIOMASS_t_cruzi,iIS312_Trypomastigote,1,X, +BIOMASS_HP_published,iIT341,1,X,BiomassHP published +BIOMASS_PIGMENTS,iJB785,9,,Biomass: pigments and xanthophylls +BIOMASS__1,iJB785,9,X,Biomass objective function +BIOMASS_DNA,iJB785,9,,Biomass: DNA +BIOMASS_CELL_WALL,iJB785,9,,Biomass: Cell wall (LPS and peptidoglycan) +BIOMASS_COFACTORS_iJB785,iJB785,9,,Biomass: cofactor pool +BIOMASS_MEM_LIPIDS,iJB785,9,,BioLip +BIOMASS_PROTEIN_iJB785,iJB785,9,,Biomass: protein +BIOMASS_RNA,iJB785,9,,Biomass: RNA +BIOMASS_CARB_iJB785,iJB785,9,,Biomass: carbohydrates (storage and misc.) +BIOMASS_KT2440_Core2,iJN1463,2,,Biomass P putida KT2440 aa DNA RNA ATP murein FA ions +BIOMASS_KT2440_WT3,iJN1463,2,X,Biomass P putida KT2440 aa DNA RNA ATP murein FA ions soluble +BIOMASS_Ec_SynAuto_iJN678,iJN678,3,,Autotrophic Biomass Ecuation +BIOMASS_Ec_SynMixo_iJN678,iJN678,3,,Mixotrophic Biomass Ecuation +BIOMASS_Ec_SynHetero_iJN678,iJN678,3,X,Heterotrophic Biomass Ecuation +BIOMASS_KT_TEMP,iJN746,1,X,BiomassKT TEMP +BIOMASS_Ec_iJO1366_WT_53p95M,iJO1366,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iJO1366,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ecoli,iJR904,1,X,BiomassEcoli +BIOMASS_Ec_iJO1366_WT_53p95M,iLF82_1304,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iLF82_1304,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ecoli_TM,iLJ478,1,X,Biomass Thermotoga - values taken from iJR904 +BIOMASS_Ec_iML1515_core_75p37M,iML1515,2,,E. coli biomass objective function (iML1515) - core - with 75.37 GAM estimate +BIOMASS_Ec_iML1515_WT_75p37M,iML1515,2,X,E. coli biomass objective function (iML1515) - WT - with 75.37 GAM estimate +BIOMASS_SC5_notrace,iMM904,1,X,Biomass SC5 notrace +BIOMASS_SC4_bal,iND750,1,X,Biomass SC4 bal +BIOMASS_LLA,iNF517,2,X,Biomass equation LLA specific +PROTS_LLA_v3_iNF517,iNF517,2,,Protein synthesis LLA for lactis v3 +BIOMASS_Mtb_9_60atp_iNJ661,iNJ661,1,X,Biomass Mtb 9 60atp +BIOMASS_Ec_iJO1366_WT_53p95M,iNRG857_1313,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iNRG857_1313,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_25C,iPC815,2,X,25C biomass +BIOMASS_37C,iPC815,2,,37C biomass +BIOMASS_Chlamy_auto_iRC1080,iRC1080,3,,Biomass (autotrophic) +BIOMASS_Chlamy_mixo_iRC1080,iRC1080,3,,Biomass (mixotrophic) +BIOMASS_Chlamy_hetero_iRC1080,iRC1080,3,X,Biomass (heterotrophic) +BIOMASS_Ec_iJO1366_WT_53p95M,iS_1188,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iS_1188,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_SA_8a,iSB619,1,X,SA biomass 8 without ions +BIOMASS_Ec_iJO1366_WT_53p95M,iSbBS512_1146,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iSbBS512_1146,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iSBO_1134,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iSBO_1134,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iSDY_1059,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iSDY_1059,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iSF_1195,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iSF_1195,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iSFV_1184,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iSFV_1184,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iSFxv_1172,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iSFxv_1172,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iSSON_1240,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iSSON_1240,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_SynAuto_1_iSynCJ816,iSynCJ816,3,,Autotrophic Biomass Growth +BIOMASS_Ec_SynMixo_1_iSynCJ816,iSynCJ816,3,,Mixotrophic Biomass Growth +BIOMASS_Ec_SynHetero_1_iSynCJ816,iSynCJ816,3,X,Heterotrophic Biomass Growth +BIOMASS_Ec_iJO1366_WT_53p95M,iUMN146_1321,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iUMN146_1321,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iUMNK88_1353,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iUMNK88_1353,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iUTI89_1310,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iUTI89_1310,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iWFL_1372,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iWFL_1372,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_WT_53p95M,iY75_1357,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iY75_1357,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS__iYL1228,iYL1228,1,X,Biomass +BIOMASS_BS_10,iYO844,1,X,B subtilis biomass demand +BIOMASS_iRR1083_1_iYS1720,iYS1720,4,,Biomass equation from http://www.biomedcentral.com/1752-0509/3/38 +BIOMASS_iRR1083_metals_1_iYS1720,iYS1720,4,,Biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function +BIOMASS_invivo,iYS1720,4,,Biomass equation adapted to in vivo conditions +BIOMASS_Ec_iAF1260_core_59p81M,iYS1720,4,X,E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate +BIOMASS_CELLWALL,iYS854,9,, +BIOMASS_DNA_1,iYS854,9,, +BIOMASS_LIPIDS_wild_type,iYS854,9,, +BIOMASS_MeasuredSOLUTES_CDMG,iYS854,9,, +BIOMASS_OtherSOLUTES_wild_type,iYS854,9,, +BIOMASS_PROTEIN_1,iYS854,9,, +BIOMASS_RNA_1,iYS854,9,, +BIOMASS_iYS_wild_type,iYS854,9,X, +BIOMASS_WT_lumped,iYS854,9,, +BIOMASS_Ec_iJO1366_WT_53p95M,iZ_1308,2,X,E. coli biomass objective function (iJO1366) - WT - with 53.95 GAM estimate +BIOMASS_Ec_iJO1366_core_53p95M,iZ_1308,2,,E. coli biomass objective function (iJO1366) - core - with 53.95 GAM estimate +BIOMASS_Ec_iAF1260_core_59p81M,STM_v1_0,3,X,E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate +BIOMASS_iRR1083_metals,STM_v1_0,3,,Biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function +BIOMASS_iRR1083,STM_v1_0,3,,Biomass equation from http://www.biomedcentral.com/1752-0509/3/38 +Biomass_iSM199,iSM199,1,X,biomass reaction