From b68a5e76502dc66a21cd51375bad80607660793d Mon Sep 17 00:00:00 2001
From: Mayo Roettger <mayo.roettger@uni-duesseldorf.de>
Date: Thu, 7 Mar 2019 14:02:37 +0100
Subject: [PATCH] omitting invalid URLs for CRAN submission
---
DESCRIPTION | 6 +++---
inst/NEWS.Rd | 11 +++++++++--
man/Ec_core.Rd | 2 --
man/modelorg2ExPA.Rd | 2 --
4 files changed, 12 insertions(+), 9 deletions(-)
diff --git a/DESCRIPTION b/DESCRIPTION
index d6d9aa7..5c43428 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,8 +1,8 @@
Package: sybil
Type: Package
Title: Efficient Constrained Based Modelling
-Version: 2.1.4
-Date: 2019-02-25
+Version: 2.1.5
+Date: 2019-03-07
Authors@R: c(
person("Mayo", "Roettger", role = c("cre"), email = "mayo.roettger@hhu.de"),
person("Gabriel", "Gelius-Dietrich", role = "aut"),
@@ -56,7 +56,7 @@ Collate: generics.R validmodelorg.R validoptsol.R validreactId.R validreact.R
sysBiolAlg_mtfClass.R sysBiolAlg_mtfEasyConstraintClass.R
sysBiolAlg_roomClass.R sybilLogClass.R upgradeModelorg.R
mergeReact2Modelorg.R
-Packaged: 2019-02-25 13:55:00 UTC; mayo
+Packaged: 2019-03-07 10:20:00 UTC; mayo
Author: Mayo Roettger [cre],
Gabriel Gelius-Dietrich [aut],
C. Jonathan Fritzemeier [ctb],
diff --git a/inst/NEWS.Rd b/inst/NEWS.Rd
index f602705..5c3f25d 100644
--- a/inst/NEWS.Rd
+++ b/inst/NEWS.Rd
@@ -7,6 +7,14 @@
\newcommand{\CRANpkg}{\href{https://CRAN.R-project.org/package=#1}{\pkg{#1}}}
% ---------------------------------------------------------------------------- %
+\section{Changes in version 2.1.5 2019-03-07}{
+ \itemize{
+ \item Minor changes removing invalid URLs for CRAN submission.
+ \
+ }
+}
+% ---------------------------------------------------------------------------- %
+
\section{Changes in version 2.1.4 2019-02-25}{
\itemize{
\item Minor code change in \code{addExchReact} for CRAN submission, where
@@ -541,8 +549,7 @@
\section{Changes in version 1.1.0 2012-10-08}{
\itemize{
\item some performance improvements in function \code{fluxVar}
- \item new function \code{modelorg2ExPA}, which writes input files for
- \href{http://gcrg.ucsd.edu/Downloads/ExtremePathwayAnalysis}{ExPA}
+ \item new function \code{modelorg2ExPA}
\item some very minor improvements in sybilStack (stack [LIFO] and
queue [FIFO])
\item solver names \code{glpk}, \code{cplex} and \code{clp} are deprecated,
diff --git a/man/Ec_core.Rd b/man/Ec_core.Rd
index 0f48f1e..3547a36 100644
--- a/man/Ec_core.Rd
+++ b/man/Ec_core.Rd
@@ -16,8 +16,6 @@
\format{An object of class \code{modelorg}}
-\source{\url{http://gcrg.ucsd.edu/Downloads/EcoliCore}}
-
\references{
Bernhard Ø. Palsson (2006).
\emph{Systems Biology: Properties of Reconstructed Networks}.
diff --git a/man/modelorg2ExPA.Rd b/man/modelorg2ExPA.Rd
index c7350ec..0f3c90a 100644
--- a/man/modelorg2ExPA.Rd
+++ b/man/modelorg2ExPA.Rd
@@ -65,8 +65,6 @@
Bell, S. L. and Palsson, B. Ø. (2005) Expa: a program for calculating extreme
pathways in biochemical reaction networks. \emph{Bioinformatics} \bold{21},
1739--1740.
-
- The ExPA homepage \url{http://gcrg.ucsd.edu/Downloads/ExtremePathwayAnalysis}.
}
\author{
--
GitLab