From 52b45dc577e20a76527ec8348530c6c1077e41d5 Mon Sep 17 00:00:00 2001
From: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@hhu.de>
Date: Wed, 17 Jun 2015 11:26:04 +0200
Subject: [PATCH] changed maintainer in manpages
---
man/SYBIL_SETTINGS.Rd | 5 +++--
man/addAlgorithm.Rd | 5 ++++-
man/addCols-methods.Rd | 5 ++++-
man/addColsToProb-methods.Rd | 5 ++++-
man/addExchReact.Rd | 7 ++++++-
man/addReact.Rd | 7 ++++++-
man/addRows-methods.Rd | 5 ++++-
man/addRowsCols-methods.Rd | 5 ++++-
man/addRowsToProb-methods.Rd | 5 ++++-
man/addSolver.Rd | 7 ++++++-
man/applyChanges-methods.Rd | 5 ++++-
man/backupProb-methods.Rd | 5 ++++-
man/blockedReact.Rd | 5 ++++-
man/changeBounds.Rd | 7 ++++++-
man/changeColsBnds-methods.Rd | 5 ++++-
man/changeColsBndsObjCoefs-methods.Rd | 5 ++++-
man/changeGPR.Rd | 7 ++++++-
man/changeMatrixRow-methods.Rd | 5 ++++-
man/changeObjCoefs-methods.Rd | 5 ++++-
man/changeObjFunc.Rd | 7 ++++++-
man/changeRowsBnds-methods.Rd | 5 ++++-
man/changeUptake-methods.Rd | 5 ++++-
man/checkAkgorithm.Rd | 5 ++++-
man/checkDefaultMethod.Rd | 5 +++--
man/checkOptSol-methods.Rd | 7 ++++++-
man/checkReactId.Rd | 7 ++++++-
man/checksol-class.Rd | 7 ++++++-
man/deadEndMetabolites-methods.Rd | 5 ++++-
man/delProb-methods.Rd | 5 ++++-
man/deprecated.Rd | 5 ++++-
man/doubleFluxDel.Rd | 7 ++++++-
man/doubleGeneDel.Rd | 7 ++++++-
man/doubleReact.Rd | 7 ++++++-
man/editEnvir.Rd | 7 ++++++-
man/findExchReact.Rd | 7 ++++++-
man/fluxDistribution-class.Rd | 7 ++++++-
man/fluxVar.Rd | 7 ++++++-
man/geneDel.Rd | 5 ++++-
man/geneDeletion.Rd | 7 ++++++-
man/getColPrim-methods.Rd | 5 ++++-
man/getColsLowBnds-methods.Rd | 5 ++++-
man/getColsNames-methods.Rd | 5 ++++-
man/getColsUppBnds-methods.Rd | 5 ++++-
man/getFluxDist-methods.Rd | 5 ++++-
man/getNumCols-methods.Rd | 5 ++++-
man/getNumNnz-methods.Rd | 5 ++++-
man/getNumRows-methods.Rd | 5 ++++-
man/getObjCoefs-methods.Rd | 5 ++++-
man/getObjDir-methods.Rd | 5 ++++-
man/getObjVal-methods.Rd | 5 ++++-
man/getRedCosts-methods.Rd | 5 ++++-
man/getRowsLowBnds-methods.Rd | 5 ++++-
man/getRowsNames-methods.Rd | 5 ++++-
man/getRowsUppBnds-methods.Rd | 5 ++++-
man/getSolStat-methods.Rd | 5 ++++-
man/getSolverParm-methods.Rd | 5 ++++-
man/getsybilenv.Rd | 7 ++++++-
man/initProb-methods.Rd | 5 ++++-
man/loadLPprob-methods.Rd | 5 ++++-
man/loadQobj-methods.Rd | 5 ++++-
man/makeOptsolMO.Rd | 7 ++++++-
man/mod2irrev.Rd | 7 ++++++-
man/modelorg-class.Rd | 7 ++++++-
man/modelorg2ExPA.Rd | 5 ++++-
man/modelorg2tsv.Rd | 5 ++++-
man/modelorg_irrev-class.Rd | 7 ++++++-
man/multiDel.Rd | 5 ++++-
man/netFlux-class.Rd | 7 ++++++-
man/oneFluxDel.Rd | 7 ++++++-
man/oneGeneDel.Rd | 7 ++++++-
man/onlyChangeGPR.Rd | 7 ++++++-
man/onlyCheckGPR.Rd | 7 ++++++-
man/optObj-class.Rd | 7 ++++++-
man/optObj.Rd | 5 ++++-
man/optObj_clpAPI-class.Rd | 7 ++++++-
man/optObj_cplexAPI-class.Rd | 7 ++++++-
man/optObj_glpkAPI-class.Rd | 7 ++++++-
man/optObj_lpSolveAPI-class.Rd | 7 ++++++-
man/optimizeProb-methods.Rd | 5 ++++-
man/optimizer.Rd | 7 ++++++-
man/optsol-class.Rd | 7 ++++++-
man/optsol_blockedReact-class.Rd | 7 ++++++-
man/optsol_fluxVar-class.Rd | 7 ++++++-
man/optsol_fluxdel-class.Rd | 7 ++++++-
man/optsol_genedel-class.Rd | 7 ++++++-
man/optsol_optimizeProb-class.Rd | 7 ++++++-
man/optsol_phpp-class.Rd | 7 ++++++-
man/optsol_robAna-class.Rd | 7 ++++++-
man/phpp.Rd | 7 ++++++-
man/ppProc-class.Rd | 7 ++++++-
man/printMetabolite-methods.Rd | 5 ++++-
man/printReaction-methods.Rd | 5 ++++-
man/promptSysBiolAlg.Rd | 5 ++++-
man/reactId-class.Rd | 7 ++++++-
man/reactId_Exch-class.Rd | 7 ++++++-
man/readProb-methods.Rd | 5 ++++-
man/readTSVmod.Rd | 5 ++++-
man/resetChanges-methods.Rd | 5 ++++-
man/rmReact.Rd | 7 ++++++-
man/robAna.Rd | 7 ++++++-
man/scaleProb-methods.Rd | 5 ++++-
man/sensitivityAnalysis-methods.Rd | 5 ++++-
man/setColsNames-methods.Rd | 5 ++++-
man/setObjDir-methods.Rd | 5 ++++-
man/setRhsZero-methods.Rd | 5 ++++-
man/setRowsNames-methods.Rd | 5 ++++-
man/setSolverParm-methods.Rd | 5 ++++-
man/shrinkMatrix-methods.Rd | 5 ++++-
man/singletonMetabolites-methods.Rd | 5 ++++-
man/solveLp-methods.Rd | 5 ++++-
man/summaryOptsol-class.Rd | 5 ++++-
man/summaryOptsol.Rd | 5 ++++-
man/sybil-package.Rd | 5 +++--
man/sybilError-class.Rd | 7 ++++++-
man/sybilLog-class.Rd | 7 ++++++-
man/sybilStack.Rd | 5 +++--
man/sysBiolAlg-class.Rd | 5 ++++-
man/sysBiolAlg.Rd | 5 ++++-
man/sysBiolAlg_fba-class.Rd | 5 ++++-
man/sysBiolAlg_fv-class.Rd | 5 ++++-
man/sysBiolAlg_lmoma-class.Rd | 5 ++++-
man/sysBiolAlg_moma-class.Rd | 5 ++++-
man/sysBiolAlg_mtf-class.Rd | 5 ++++-
man/sysBiolAlg_room-class.Rd | 5 ++++-
man/writeProb-methods.Rd | 5 ++++-
man/ypd.Rd | 5 ++++-
126 files changed, 598 insertions(+), 130 deletions(-)
diff --git a/man/SYBIL_SETTINGS.Rd b/man/SYBIL_SETTINGS.Rd
index 6823764..75810ed 100644
--- a/man/SYBIL_SETTINGS.Rd
+++ b/man/SYBIL_SETTINGS.Rd
@@ -153,11 +153,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
- Maintainer: Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{checkDefaultMethod}}
}
diff --git a/man/addAlgorithm.Rd b/man/addAlgorithm.Rd
index 457b89b..3f3f525 100644
--- a/man/addAlgorithm.Rd
+++ b/man/addAlgorithm.Rd
@@ -27,9 +27,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{checkAlgorithm}}, \code{\link{getsybilenv}}
}
diff --git a/man/addCols-methods.Rd b/man/addCols-methods.Rd
index 8e9a834..42800bc 100644
--- a/man/addCols-methods.Rd
+++ b/man/addCols-methods.Rd
@@ -54,9 +54,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addColsToProb-methods.Rd b/man/addColsToProb-methods.Rd
index 30ad5d6..b5bdcf2 100644
--- a/man/addColsToProb-methods.Rd
+++ b/man/addColsToProb-methods.Rd
@@ -74,9 +74,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addExchReact.Rd b/man/addExchReact.Rd
index 6f901b8..5c7370d 100644
--- a/man/addExchReact.Rd
+++ b/man/addExchReact.Rd
@@ -60,7 +60,12 @@
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}} and \code{\link{addReact}}
diff --git a/man/addReact.Rd b/man/addReact.Rd
index 8f286da..5e10126 100644
--- a/man/addReact.Rd
+++ b/man/addReact.Rd
@@ -137,7 +137,12 @@ shrinkMatrix(modelNew, j="newReact")
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}} and \code{\link{rmReact}}
diff --git a/man/addRows-methods.Rd b/man/addRows-methods.Rd
index 3e94474..15b3b2d 100644
--- a/man/addRows-methods.Rd
+++ b/man/addRows-methods.Rd
@@ -54,9 +54,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addRowsCols-methods.Rd b/man/addRowsCols-methods.Rd
index f1c6583..1b4a51b 100644
--- a/man/addRowsCols-methods.Rd
+++ b/man/addRowsCols-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addRowsToProb-methods.Rd b/man/addRowsToProb-methods.Rd
index b035e59..6f2d6b8 100644
--- a/man/addRowsToProb-methods.Rd
+++ b/man/addRowsToProb-methods.Rd
@@ -86,9 +86,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addSolver.Rd b/man/addSolver.Rd
index c40179f..528f36a 100644
--- a/man/addSolver.Rd
+++ b/man/addSolver.Rd
@@ -42,7 +42,12 @@
The function returns \code{NULL} invisibly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{SYBIL_SETTINGS}}
diff --git a/man/applyChanges-methods.Rd b/man/applyChanges-methods.Rd
index d5b3e9b..99d5bbf 100644
--- a/man/applyChanges-methods.Rd
+++ b/man/applyChanges-methods.Rd
@@ -130,9 +130,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{sysBiolAlg}} and \code{\link{resetChanges}}
}
diff --git a/man/backupProb-methods.Rd b/man/backupProb-methods.Rd
index 25f163f..d9ed9d6 100644
--- a/man/backupProb-methods.Rd
+++ b/man/backupProb-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/blockedReact.Rd b/man/blockedReact.Rd
index 6f9a972..b461f2b 100644
--- a/man/blockedReact.Rd
+++ b/man/blockedReact.Rd
@@ -74,9 +74,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{modelorg}},
\code{\linkS4class{optsol_blockedReact}} and
diff --git a/man/changeBounds.Rd b/man/changeBounds.Rd
index 58d4d44..c15ae4d 100644
--- a/man/changeBounds.Rd
+++ b/man/changeBounds.Rd
@@ -49,7 +49,12 @@
\code{lpmodel}) containing the new objective function.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/changeColsBnds-methods.Rd b/man/changeColsBnds-methods.Rd
index ffae5ab..75e0962 100644
--- a/man/changeColsBnds-methods.Rd
+++ b/man/changeColsBnds-methods.Rd
@@ -62,9 +62,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeColsBndsObjCoefs-methods.Rd b/man/changeColsBndsObjCoefs-methods.Rd
index 2b42142..c7156a9 100644
--- a/man/changeColsBndsObjCoefs-methods.Rd
+++ b/man/changeColsBndsObjCoefs-methods.Rd
@@ -70,9 +70,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeGPR.Rd b/man/changeGPR.Rd
index cf5eb14..ecf88c2 100644
--- a/man/changeGPR.Rd
+++ b/man/changeGPR.Rd
@@ -28,5 +28,10 @@
Then the changes are executed.
}
-\author{Benjamin Braasch}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
diff --git a/man/changeMatrixRow-methods.Rd b/man/changeMatrixRow-methods.Rd
index d3d3be1..de2a939 100644
--- a/man/changeMatrixRow-methods.Rd
+++ b/man/changeMatrixRow-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeObjCoefs-methods.Rd b/man/changeObjCoefs-methods.Rd
index eaeff40..65f9390 100644
--- a/man/changeObjCoefs-methods.Rd
+++ b/man/changeObjCoefs-methods.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeObjFunc.Rd b/man/changeObjFunc.Rd
index 54e2945..0551bfb 100644
--- a/man/changeObjFunc.Rd
+++ b/man/changeObjFunc.Rd
@@ -44,7 +44,12 @@
Returns the given model containing the new objective function.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/changeRowsBnds-methods.Rd b/man/changeRowsBnds-methods.Rd
index 178814b..81219a3 100644
--- a/man/changeRowsBnds-methods.Rd
+++ b/man/changeRowsBnds-methods.Rd
@@ -66,9 +66,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeUptake-methods.Rd b/man/changeUptake-methods.Rd
index 24d29ea..5dc9d7b 100644
--- a/man/changeUptake-methods.Rd
+++ b/man/changeUptake-methods.Rd
@@ -55,9 +55,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\value{
An object of class \code{\linkS4class{modelorg}}.
}
diff --git a/man/checkAkgorithm.Rd b/man/checkAkgorithm.Rd
index 0b450c1..f741d63 100644
--- a/man/checkAkgorithm.Rd
+++ b/man/checkAkgorithm.Rd
@@ -27,9 +27,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{addAlgorithm}}, \code{\link{getsybilenv}}
}
diff --git a/man/checkDefaultMethod.Rd b/man/checkDefaultMethod.Rd
index 9ccae53..66ead13 100644
--- a/man/checkDefaultMethod.Rd
+++ b/man/checkDefaultMethod.Rd
@@ -64,11 +64,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
- Maintainer: Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{SYBIL_SETTINGS}} and \code{\link{getsybilenv}}
}
diff --git a/man/checkOptSol-methods.Rd b/man/checkOptSol-methods.Rd
index 2163730..ae86bd4 100644
--- a/man/checkOptSol-methods.Rd
+++ b/man/checkOptSol-methods.Rd
@@ -54,7 +54,12 @@
\code{\linkS4class{checksol}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{checksol}},
diff --git a/man/checkReactId.Rd b/man/checkReactId.Rd
index 42efec4..7fa4641 100644
--- a/man/checkReactId.Rd
+++ b/man/checkReactId.Rd
@@ -38,7 +38,12 @@
\code{react} contains any reactions not in \code{model}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\linkS4class{reactId}}}
diff --git a/man/checksol-class.Rd b/man/checksol-class.Rd
index e8c8b32..25dba12 100644
--- a/man/checksol-class.Rd
+++ b/man/checksol-class.Rd
@@ -122,7 +122,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkOptSol}}}
diff --git a/man/deadEndMetabolites-methods.Rd b/man/deadEndMetabolites-methods.Rd
index 483a9b1..4ed4c0b 100644
--- a/man/deadEndMetabolites-methods.Rd
+++ b/man/deadEndMetabolites-methods.Rd
@@ -44,9 +44,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{modelorg}} and \code{\link{readTSVmod}}.
}
diff --git a/man/delProb-methods.Rd b/man/delProb-methods.Rd
index 0ca6be1..e808643 100644
--- a/man/delProb-methods.Rd
+++ b/man/delProb-methods.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/deprecated.Rd b/man/deprecated.Rd
index 7c707ae..2c0e94d 100644
--- a/man/deprecated.Rd
+++ b/man/deprecated.Rd
@@ -19,9 +19,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{Deprecated}}
}
diff --git a/man/doubleFluxDel.Rd b/man/doubleFluxDel.Rd
index 419cd37..9395ed0 100644
--- a/man/doubleFluxDel.Rd
+++ b/man/doubleFluxDel.Rd
@@ -81,7 +81,12 @@
An object of class \code{\linkS4class{optsol_fluxdel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/doubleGeneDel.Rd b/man/doubleGeneDel.Rd
index 6a093ad..eddaf4a 100644
--- a/man/doubleGeneDel.Rd
+++ b/man/doubleGeneDel.Rd
@@ -95,7 +95,12 @@
An object of class \code{\linkS4class{optsol_genedel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/doubleReact.Rd b/man/doubleReact.Rd
index 8494fee..b88f7ee 100644
--- a/man/doubleReact.Rd
+++ b/man/doubleReact.Rd
@@ -57,7 +57,12 @@
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\note{
At the moment, the directions of a pair of reactions is not
diff --git a/man/editEnvir.Rd b/man/editEnvir.Rd
index d5acbbb..a77af88 100644
--- a/man/editEnvir.Rd
+++ b/man/editEnvir.Rd
@@ -29,7 +29,12 @@
An object of class \code{\linkS4class{modelorg}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/findExchReact.Rd b/man/findExchReact.Rd
index 2e320ce..3d35a78 100644
--- a/man/findExchReact.Rd
+++ b/man/findExchReact.Rd
@@ -69,5 +69,10 @@
getFluxDist(opt, ex)
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
diff --git a/man/fluxDistribution-class.Rd b/man/fluxDistribution-class.Rd
index 8654dd9..6c1dc27 100644
--- a/man/fluxDistribution-class.Rd
+++ b/man/fluxDistribution-class.Rd
@@ -83,7 +83,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
showClass("fluxDistribution")
diff --git a/man/fluxVar.Rd b/man/fluxVar.Rd
index cad64c6..b721fca 100644
--- a/man/fluxVar.Rd
+++ b/man/fluxVar.Rd
@@ -67,7 +67,12 @@
Cambridge University Press.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
data(Ec_core)
diff --git a/man/geneDel.Rd b/man/geneDel.Rd
index 3a8ddb0..ec9fe8b 100644
--- a/man/geneDel.Rd
+++ b/man/geneDel.Rd
@@ -49,9 +49,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{optimizer}}
}
diff --git a/man/geneDeletion.Rd b/man/geneDeletion.Rd
index 4e50477..7c59b4f 100644
--- a/man/geneDeletion.Rd
+++ b/man/geneDeletion.Rd
@@ -89,7 +89,12 @@
An object of class \code{\linkS4class{optsol_genedel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/getColPrim-methods.Rd b/man/getColPrim-methods.Rd
index 92b4aa7..479d380 100644
--- a/man/getColPrim-methods.Rd
+++ b/man/getColPrim-methods.Rd
@@ -58,9 +58,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getColsLowBnds-methods.Rd b/man/getColsLowBnds-methods.Rd
index aeb376c..8c38b9c 100644
--- a/man/getColsLowBnds-methods.Rd
+++ b/man/getColsLowBnds-methods.Rd
@@ -58,9 +58,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getColsNames-methods.Rd b/man/getColsNames-methods.Rd
index 0fa699d..05a7a3d 100644
--- a/man/getColsNames-methods.Rd
+++ b/man/getColsNames-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getColsUppBnds-methods.Rd b/man/getColsUppBnds-methods.Rd
index 26b8e25..51e9dcc 100644
--- a/man/getColsUppBnds-methods.Rd
+++ b/man/getColsUppBnds-methods.Rd
@@ -58,9 +58,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getFluxDist-methods.Rd b/man/getFluxDist-methods.Rd
index 87e9283..eaa11c4 100644
--- a/man/getFluxDist-methods.Rd
+++ b/man/getFluxDist-methods.Rd
@@ -83,9 +83,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getNumCols-methods.Rd b/man/getNumCols-methods.Rd
index bc8597c..db2813e 100644
--- a/man/getNumCols-methods.Rd
+++ b/man/getNumCols-methods.Rd
@@ -55,9 +55,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getNumNnz-methods.Rd b/man/getNumNnz-methods.Rd
index fd39afd..c7906cf 100644
--- a/man/getNumNnz-methods.Rd
+++ b/man/getNumNnz-methods.Rd
@@ -50,9 +50,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getNumRows-methods.Rd b/man/getNumRows-methods.Rd
index 3e6e375..455b8d3 100644
--- a/man/getNumRows-methods.Rd
+++ b/man/getNumRows-methods.Rd
@@ -55,9 +55,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getObjCoefs-methods.Rd b/man/getObjCoefs-methods.Rd
index ff2c85a..1ea7d8d 100644
--- a/man/getObjCoefs-methods.Rd
+++ b/man/getObjCoefs-methods.Rd
@@ -58,9 +58,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getObjDir-methods.Rd b/man/getObjDir-methods.Rd
index 2411dee..4dbad8a 100644
--- a/man/getObjDir-methods.Rd
+++ b/man/getObjDir-methods.Rd
@@ -56,9 +56,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getObjVal-methods.Rd b/man/getObjVal-methods.Rd
index e5d7d67..d778cd1 100644
--- a/man/getObjVal-methods.Rd
+++ b/man/getObjVal-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getRedCosts-methods.Rd b/man/getRedCosts-methods.Rd
index b8fa314..c1dd72b 100644
--- a/man/getRedCosts-methods.Rd
+++ b/man/getRedCosts-methods.Rd
@@ -51,9 +51,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\value{
A numeric vector containing the reduced costs of all variables.
}
diff --git a/man/getRowsLowBnds-methods.Rd b/man/getRowsLowBnds-methods.Rd
index 33ddaa1..90ec08e 100644
--- a/man/getRowsLowBnds-methods.Rd
+++ b/man/getRowsLowBnds-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getRowsNames-methods.Rd b/man/getRowsNames-methods.Rd
index ec1a2f6..799217b 100644
--- a/man/getRowsNames-methods.Rd
+++ b/man/getRowsNames-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getRowsUppBnds-methods.Rd b/man/getRowsUppBnds-methods.Rd
index 6a9a36d..c321206 100644
--- a/man/getRowsUppBnds-methods.Rd
+++ b/man/getRowsUppBnds-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getSolStat-methods.Rd b/man/getSolStat-methods.Rd
index 6922a8a..b3942fb 100644
--- a/man/getSolStat-methods.Rd
+++ b/man/getSolStat-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Function \code{\link{getMeanStatus}} and superclass
\code{\linkS4class{optObj}} and constructor function
diff --git a/man/getSolverParm-methods.Rd b/man/getSolverParm-methods.Rd
index bff9414..f1a7fd2 100644
--- a/man/getSolverParm-methods.Rd
+++ b/man/getSolverParm-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getsybilenv.Rd b/man/getsybilenv.Rd
index 1f86355..e798230 100644
--- a/man/getsybilenv.Rd
+++ b/man/getsybilenv.Rd
@@ -48,7 +48,12 @@
Returns \code{NULL} invisibly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{addSolver}}, \code{\link{checkDefaultMethod}}
diff --git a/man/initProb-methods.Rd b/man/initProb-methods.Rd
index a8e39e0..dfea6fc 100644
--- a/man/initProb-methods.Rd
+++ b/man/initProb-methods.Rd
@@ -78,9 +78,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/loadLPprob-methods.Rd b/man/loadLPprob-methods.Rd
index 54f93a5..5df57cc 100644
--- a/man/loadLPprob-methods.Rd
+++ b/man/loadLPprob-methods.Rd
@@ -207,9 +207,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/loadQobj-methods.Rd b/man/loadQobj-methods.Rd
index 8e0b9e4..09550c0 100644
--- a/man/loadQobj-methods.Rd
+++ b/man/loadQobj-methods.Rd
@@ -44,9 +44,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/makeOptsolMO.Rd b/man/makeOptsolMO.Rd
index b36a0c9..b464a41 100644
--- a/man/makeOptsolMO.Rd
+++ b/man/makeOptsolMO.Rd
@@ -27,7 +27,12 @@
An object of class \code{\linkS4class{optsol_optimizeProb}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Class \code{\linkS4class{optsol_optimizeProb}},
diff --git a/man/mod2irrev.Rd b/man/mod2irrev.Rd
index ec40662..ec9e145 100644
--- a/man/mod2irrev.Rd
+++ b/man/mod2irrev.Rd
@@ -50,7 +50,12 @@
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich, Markus Herrgard}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\linkS4class{modelorg_irrev}}}
diff --git a/man/modelorg-class.Rd b/man/modelorg-class.Rd
index 0a8474f..2b34679 100644
--- a/man/modelorg-class.Rd
+++ b/man/modelorg-class.Rd
@@ -433,7 +433,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg_irrev}} for models in irreversible format.
diff --git a/man/modelorg2ExPA.Rd b/man/modelorg2ExPA.Rd
index 4d88990..804bb2a 100644
--- a/man/modelorg2ExPA.Rd
+++ b/man/modelorg2ExPA.Rd
@@ -70,7 +70,10 @@
}
\author{
- Gabriel Gelius-Dietrich, C. Jonathan Fritzemeier
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\keyword{ IO }
diff --git a/man/modelorg2tsv.Rd b/man/modelorg2tsv.Rd
index 52c745c..32423dd 100644
--- a/man/modelorg2tsv.Rd
+++ b/man/modelorg2tsv.Rd
@@ -151,9 +151,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{read.table}}, \code{\link{modelorg2tsv}}, \code{\link{modelorg}}.
}
diff --git a/man/modelorg_irrev-class.Rd b/man/modelorg_irrev-class.Rd
index b4c76bd..9fae8c4 100644
--- a/man/modelorg_irrev-class.Rd
+++ b/man/modelorg_irrev-class.Rd
@@ -96,7 +96,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}}
diff --git a/man/multiDel.Rd b/man/multiDel.Rd
index a60d034..6774846 100644
--- a/man/multiDel.Rd
+++ b/man/multiDel.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{mclapply}}, \code{\linkS4class{optsol}}, \code{\link{oneGeneDel}},
\code{\link{doubleGeneDel}}, \code{\link{oneFluxDel}},
diff --git a/man/netFlux-class.Rd b/man/netFlux-class.Rd
index 699896e..ca82318 100644
--- a/man/netFlux-class.Rd
+++ b/man/netFlux-class.Rd
@@ -70,7 +70,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{optimizeProb}}, \code{\link{getFluxDist}}
diff --git a/man/oneFluxDel.Rd b/man/oneFluxDel.Rd
index eafe5b7..7138b3b 100644
--- a/man/oneFluxDel.Rd
+++ b/man/oneFluxDel.Rd
@@ -63,7 +63,12 @@
An object of class \code{\linkS4class{optsol_fluxdel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/oneGeneDel.Rd b/man/oneGeneDel.Rd
index eb13f5d..adc8d69 100644
--- a/man/oneGeneDel.Rd
+++ b/man/oneGeneDel.Rd
@@ -65,7 +65,12 @@
An object of class \code{\linkS4class{optsol_genedel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/onlyChangeGPR.Rd b/man/onlyChangeGPR.Rd
index 643ab9e..2629031 100644
--- a/man/onlyChangeGPR.Rd
+++ b/man/onlyChangeGPR.Rd
@@ -27,6 +27,11 @@
Use onlyCheckGPR first to check the expressions.
}
-\author{Benjamin Braasch}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\keyword{change}
diff --git a/man/onlyCheckGPR.Rd b/man/onlyCheckGPR.Rd
index 46a05cb..e8387f9 100644
--- a/man/onlyCheckGPR.Rd
+++ b/man/onlyCheckGPR.Rd
@@ -25,6 +25,11 @@
The function checks the expressions for the chosen reactions.
}
-\author{Benjamin Braasch}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\keyword{check}
diff --git a/man/optObj-class.Rd b/man/optObj-class.Rd
index 6207d6a..e747564 100644
--- a/man/optObj-class.Rd
+++ b/man/optObj-class.Rd
@@ -276,7 +276,12 @@
\code{lp@oobj@env}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
The constructor function \code{\link{sysBiolAlg}} for objects extending
diff --git a/man/optObj.Rd b/man/optObj.Rd
index 664d846..2848497 100644
--- a/man/optObj.Rd
+++ b/man/optObj.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{optObj}}, \code{\link{SYBIL_SETTINGS}}
and \code{\link{checkDefaultMethod}}.
diff --git a/man/optObj_clpAPI-class.Rd b/man/optObj_clpAPI-class.Rd
index 2f8e08c..7419e9f 100644
--- a/man/optObj_clpAPI-class.Rd
+++ b/man/optObj_clpAPI-class.Rd
@@ -44,7 +44,12 @@
Class \code{"\linkS4class{optObj}"}, directly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
diff --git a/man/optObj_cplexAPI-class.Rd b/man/optObj_cplexAPI-class.Rd
index a0da30e..0129f47 100644
--- a/man/optObj_cplexAPI-class.Rd
+++ b/man/optObj_cplexAPI-class.Rd
@@ -44,7 +44,12 @@
Class \code{"\linkS4class{optObj}"}, directly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
diff --git a/man/optObj_glpkAPI-class.Rd b/man/optObj_glpkAPI-class.Rd
index 4b1fcf8..9400401 100644
--- a/man/optObj_glpkAPI-class.Rd
+++ b/man/optObj_glpkAPI-class.Rd
@@ -44,7 +44,12 @@
Class \code{"\linkS4class{optObj}"}, directly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
diff --git a/man/optObj_lpSolveAPI-class.Rd b/man/optObj_lpSolveAPI-class.Rd
index 4d7d827..5e1e247 100644
--- a/man/optObj_lpSolveAPI-class.Rd
+++ b/man/optObj_lpSolveAPI-class.Rd
@@ -59,7 +59,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
diff --git a/man/optimizeProb-methods.Rd b/man/optimizeProb-methods.Rd
index 7561b76..49b7e60 100644
--- a/man/optimizeProb-methods.Rd
+++ b/man/optimizeProb-methods.Rd
@@ -286,9 +286,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{modelorg}}, \code{\link{applyChanges}} and \code{\linkS4class{sysBiolAlg}}.
}
diff --git a/man/optimizer.Rd b/man/optimizer.Rd
index 5c8cac3..11d877d 100644
--- a/man/optimizer.Rd
+++ b/man/optimizer.Rd
@@ -240,7 +240,12 @@ optimizer(model, react, lb, ub, obj_coef, lpdir,
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Class \code{\linkS4class{sysBiolAlg}}, and constructor function
diff --git a/man/optsol-class.Rd b/man/optsol-class.Rd
index 7b93e53..a18a933 100644
--- a/man/optsol-class.Rd
+++ b/man/optsol-class.Rd
@@ -320,7 +320,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}},
diff --git a/man/optsol_blockedReact-class.Rd b/man/optsol_blockedReact-class.Rd
index c7823a6..4f0450b 100644
--- a/man/optsol_blockedReact-class.Rd
+++ b/man/optsol_blockedReact-class.Rd
@@ -134,7 +134,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}} and \code{\linkS4class{optsol}}
diff --git a/man/optsol_fluxVar-class.Rd b/man/optsol_fluxVar-class.Rd
index 425ec63..86f33e0 100644
--- a/man/optsol_fluxVar-class.Rd
+++ b/man/optsol_fluxVar-class.Rd
@@ -209,7 +209,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}} and \code{\linkS4class{optsol}}
diff --git a/man/optsol_fluxdel-class.Rd b/man/optsol_fluxdel-class.Rd
index e7edb43..16289f9 100644
--- a/man/optsol_fluxdel-class.Rd
+++ b/man/optsol_fluxdel-class.Rd
@@ -193,7 +193,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}},
diff --git a/man/optsol_genedel-class.Rd b/man/optsol_genedel-class.Rd
index 0e71588..4ffee82 100644
--- a/man/optsol_genedel-class.Rd
+++ b/man/optsol_genedel-class.Rd
@@ -168,7 +168,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}},
diff --git a/man/optsol_optimizeProb-class.Rd b/man/optsol_optimizeProb-class.Rd
index 9eae26f..c36e391 100644
--- a/man/optsol_optimizeProb-class.Rd
+++ b/man/optsol_optimizeProb-class.Rd
@@ -124,7 +124,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}},
diff --git a/man/optsol_phpp-class.Rd b/man/optsol_phpp-class.Rd
index 42fee8c..bf54721 100644
--- a/man/optsol_phpp-class.Rd
+++ b/man/optsol_phpp-class.Rd
@@ -205,7 +205,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{phpp}}, \code{\link{checkOptSol}} and \code{\linkS4class{optsol}}
diff --git a/man/optsol_robAna-class.Rd b/man/optsol_robAna-class.Rd
index 0c3e22e..cd3060c 100644
--- a/man/optsol_robAna-class.Rd
+++ b/man/optsol_robAna-class.Rd
@@ -165,7 +165,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{robAna}}, \code{\link{checkOptSol}} and
diff --git a/man/phpp.Rd b/man/phpp.Rd
index de547f4..874cec5 100644
--- a/man/phpp.Rd
+++ b/man/phpp.Rd
@@ -86,7 +86,12 @@ phpp(model, ctrlreact, rng = c(0, 0, 20, 20),
Cambridge University Press.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
data(Ec_core)
diff --git a/man/ppProc-class.Rd b/man/ppProc-class.Rd
index 6f0ee9a..7bb4b2e 100644
--- a/man/ppProc-class.Rd
+++ b/man/ppProc-class.Rd
@@ -79,7 +79,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{optimizeProb}} and \code{\link{optimizer}}
diff --git a/man/printMetabolite-methods.Rd b/man/printMetabolite-methods.Rd
index b4070de..71eb2c4 100644
--- a/man/printMetabolite-methods.Rd
+++ b/man/printMetabolite-methods.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\value{
The \code{\linkS4class{modelorg}} method returns a character vector of length
equal to the number of metabolites given in argument \code{met}, invisibly.
diff --git a/man/printReaction-methods.Rd b/man/printReaction-methods.Rd
index b9be30f..715779a 100644
--- a/man/printReaction-methods.Rd
+++ b/man/printReaction-methods.Rd
@@ -73,9 +73,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\value{
The \code{\linkS4class{modelorg}} method returns invisibly a character vector
of length equal to the number of reactions given in argument \code{react}.
diff --git a/man/promptSysBiolAlg.Rd b/man/promptSysBiolAlg.Rd
index 715b30c..bbecc71 100644
--- a/man/promptSysBiolAlg.Rd
+++ b/man/promptSysBiolAlg.Rd
@@ -64,9 +64,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\linkS4class{sysBiolAlg}}
}
diff --git a/man/reactId-class.Rd b/man/reactId-class.Rd
index 459e97e..cff6778 100644
--- a/man/reactId-class.Rd
+++ b/man/reactId-class.Rd
@@ -107,7 +107,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/reactId_Exch-class.Rd b/man/reactId_Exch-class.Rd
index 5b9210b..27a8674 100644
--- a/man/reactId_Exch-class.Rd
+++ b/man/reactId_Exch-class.Rd
@@ -190,7 +190,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/readProb-methods.Rd b/man/readProb-methods.Rd
index 3b2edbf..d175196 100644
--- a/man/readProb-methods.Rd
+++ b/man/readProb-methods.Rd
@@ -70,9 +70,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/readTSVmod.Rd b/man/readTSVmod.Rd
index a38df6b..cb200ff 100644
--- a/man/readTSVmod.Rd
+++ b/man/readTSVmod.Rd
@@ -348,9 +348,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{read.table}}, \code{\link{modelorg2tsv}}, \code{\link{modelorg}}
}
diff --git a/man/resetChanges-methods.Rd b/man/resetChanges-methods.Rd
index fdf7385..b3f9ab1 100644
--- a/man/resetChanges-methods.Rd
+++ b/man/resetChanges-methods.Rd
@@ -47,9 +47,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{sysBiolAlg}} and \code{\link{applyChanges}}
}
diff --git a/man/rmReact.Rd b/man/rmReact.Rd
index 2256479..ae53c65 100644
--- a/man/rmReact.Rd
+++ b/man/rmReact.Rd
@@ -42,7 +42,12 @@
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}},
diff --git a/man/robAna.Rd b/man/robAna.Rd
index cf5b1c4..23f41dd 100644
--- a/man/robAna.Rd
+++ b/man/robAna.Rd
@@ -102,7 +102,12 @@
Cambridge University Press.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
data(Ec_core)
diff --git a/man/scaleProb-methods.Rd b/man/scaleProb-methods.Rd
index dea1caa..7d6440b 100644
--- a/man/scaleProb-methods.Rd
+++ b/man/scaleProb-methods.Rd
@@ -54,9 +54,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/sensitivityAnalysis-methods.Rd b/man/sensitivityAnalysis-methods.Rd
index 4f7fa4d..0e9033e 100644
--- a/man/sensitivityAnalysis-methods.Rd
+++ b/man/sensitivityAnalysis-methods.Rd
@@ -48,9 +48,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setColsNames-methods.Rd b/man/setColsNames-methods.Rd
index 1619b54..b10ab81 100644
--- a/man/setColsNames-methods.Rd
+++ b/man/setColsNames-methods.Rd
@@ -62,9 +62,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setObjDir-methods.Rd b/man/setObjDir-methods.Rd
index 321e2dd..bc2bbe3 100644
--- a/man/setObjDir-methods.Rd
+++ b/man/setObjDir-methods.Rd
@@ -103,9 +103,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setRhsZero-methods.Rd b/man/setRhsZero-methods.Rd
index 17ed8c1..3c54e7b 100644
--- a/man/setRhsZero-methods.Rd
+++ b/man/setRhsZero-methods.Rd
@@ -52,9 +52,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setRowsNames-methods.Rd b/man/setRowsNames-methods.Rd
index 15f935f..0f92556 100644
--- a/man/setRowsNames-methods.Rd
+++ b/man/setRowsNames-methods.Rd
@@ -62,9 +62,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setSolverParm-methods.Rd b/man/setSolverParm-methods.Rd
index c038d4e..625eaf7 100644
--- a/man/setSolverParm-methods.Rd
+++ b/man/setSolverParm-methods.Rd
@@ -64,9 +64,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/shrinkMatrix-methods.Rd b/man/shrinkMatrix-methods.Rd
index 1e0f40f..754d32b 100644
--- a/man/shrinkMatrix-methods.Rd
+++ b/man/shrinkMatrix-methods.Rd
@@ -73,9 +73,12 @@
}
\author{
- Claus Jonathan Fritzemeier, Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{modelorg}}.
}
diff --git a/man/singletonMetabolites-methods.Rd b/man/singletonMetabolites-methods.Rd
index b69519d..eec3b80 100644
--- a/man/singletonMetabolites-methods.Rd
+++ b/man/singletonMetabolites-methods.Rd
@@ -49,9 +49,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{modelorg}} and \code{\link{readTSVmod}}.
}
diff --git a/man/solveLp-methods.Rd b/man/solveLp-methods.Rd
index 8b6a88e..add853f 100644
--- a/man/solveLp-methods.Rd
+++ b/man/solveLp-methods.Rd
@@ -51,9 +51,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/summaryOptsol-class.Rd b/man/summaryOptsol-class.Rd
index adffc56..21d7d5d 100644
--- a/man/summaryOptsol-class.Rd
+++ b/man/summaryOptsol-class.Rd
@@ -153,9 +153,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{summaryOptsol}},
class \code{\linkS4class{optsol}} and class \code{\linkS4class{modelorg}}.
diff --git a/man/summaryOptsol.Rd b/man/summaryOptsol.Rd
index d0927d6..583a6aa 100644
--- a/man/summaryOptsol.Rd
+++ b/man/summaryOptsol.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{optsol}}, class \code{\linkS4class{modelorg}} and
class \code{\linkS4class{summaryOptsol}}.
diff --git a/man/sybil-package.Rd b/man/sybil-package.Rd
index 5ccce14..e82ab5a 100644
--- a/man/sybil-package.Rd
+++ b/man/sybil-package.Rd
@@ -47,11 +47,12 @@ model <- readTSVmod(prefix = "Ec_core",
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
- Maintainer: geliudie@uni-duesseldorf.de
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\references{
The BiGG database \url{http://bigg.ucsd.edu/}.
diff --git a/man/sybilError-class.Rd b/man/sybilError-class.Rd
index 9f4746f..e6787b7 100644
--- a/man/sybilError-class.Rd
+++ b/man/sybilError-class.Rd
@@ -61,7 +61,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{optimizeProb}}
diff --git a/man/sybilLog-class.Rd b/man/sybilLog-class.Rd
index cf0e940..881c192 100644
--- a/man/sybilLog-class.Rd
+++ b/man/sybilLog-class.Rd
@@ -273,7 +273,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
showClass("sybilLog")
diff --git a/man/sybilStack.Rd b/man/sybilStack.Rd
index cfdc31e..acaa5bf 100644
--- a/man/sybilStack.Rd
+++ b/man/sybilStack.Rd
@@ -83,11 +83,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
- Maintainer: Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\examples{
## initialize empty stack named test
stinit("test")
diff --git a/man/sysBiolAlg-class.Rd b/man/sysBiolAlg-class.Rd
index 941efbf..32d77de 100644
--- a/man/sysBiolAlg-class.Rd
+++ b/man/sysBiolAlg-class.Rd
@@ -244,9 +244,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
The general constructor function \code{\link{sysBiolAlg}},
and classes
diff --git a/man/sysBiolAlg.Rd b/man/sysBiolAlg.Rd
index 2392cb9..acef5e2 100644
--- a/man/sysBiolAlg.Rd
+++ b/man/sysBiolAlg.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{sysBiolAlg}}
}
diff --git a/man/sysBiolAlg_fba-class.Rd b/man/sysBiolAlg_fba-class.Rd
index ebd1563..9544496 100644
--- a/man/sysBiolAlg_fba-class.Rd
+++ b/man/sysBiolAlg_fba-class.Rd
@@ -147,9 +147,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_fv-class.Rd b/man/sysBiolAlg_fv-class.Rd
index a53ac2a..018fce9 100644
--- a/man/sysBiolAlg_fv-class.Rd
+++ b/man/sysBiolAlg_fv-class.Rd
@@ -175,9 +175,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_lmoma-class.Rd b/man/sysBiolAlg_lmoma-class.Rd
index 7762e20..8d057b4 100644
--- a/man/sysBiolAlg_lmoma-class.Rd
+++ b/man/sysBiolAlg_lmoma-class.Rd
@@ -243,9 +243,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_moma-class.Rd b/man/sysBiolAlg_moma-class.Rd
index b05f164..9ff26e7 100644
--- a/man/sysBiolAlg_moma-class.Rd
+++ b/man/sysBiolAlg_moma-class.Rd
@@ -168,9 +168,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_mtf-class.Rd b/man/sysBiolAlg_mtf-class.Rd
index 285d646..baf906d 100644
--- a/man/sysBiolAlg_mtf-class.Rd
+++ b/man/sysBiolAlg_mtf-class.Rd
@@ -202,9 +202,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_room-class.Rd b/man/sysBiolAlg_room-class.Rd
index fd13375..3f33162 100644
--- a/man/sysBiolAlg_room-class.Rd
+++ b/man/sysBiolAlg_room-class.Rd
@@ -206,9 +206,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/writeProb-methods.Rd b/man/writeProb-methods.Rd
index 42c839b..bcb82d3 100644
--- a/man/writeProb-methods.Rd
+++ b/man/writeProb-methods.Rd
@@ -69,9 +69,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/ypd.Rd b/man/ypd.Rd
index 5f2ed42..9eb05ab 100644
--- a/man/ypd.Rd
+++ b/man/ypd.Rd
@@ -128,9 +128,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\linkS4class{modelorg}}, \code{\link{findExchReact}} and
\code{\link{SYBIL_SETTINGS}}
--
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