diff --git a/man/SYBIL_SETTINGS.Rd b/man/SYBIL_SETTINGS.Rd
index 682376496aa4e5c565fbc828aae0e5b1027ea7ef..75810ed08aa3174c7c8ecfe5d64584fb2dc4b8b2 100644
--- a/man/SYBIL_SETTINGS.Rd
+++ b/man/SYBIL_SETTINGS.Rd
@@ -153,11 +153,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
- Maintainer: Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{checkDefaultMethod}}
}
diff --git a/man/addAlgorithm.Rd b/man/addAlgorithm.Rd
index 457b89b8fbb2b2aeb4f3f79e5f8a35a09a537e5a..3f3f525e92957d0b59920bc2ac7a1d59739dff1c 100644
--- a/man/addAlgorithm.Rd
+++ b/man/addAlgorithm.Rd
@@ -27,9 +27,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{checkAlgorithm}}, \code{\link{getsybilenv}}
}
diff --git a/man/addCols-methods.Rd b/man/addCols-methods.Rd
index 8e9a8343069382801f6860410c644bbaafdb04d0..42800bcfadc7ce76dceda43fbe596d923891bea0 100644
--- a/man/addCols-methods.Rd
+++ b/man/addCols-methods.Rd
@@ -54,9 +54,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addColsToProb-methods.Rd b/man/addColsToProb-methods.Rd
index 30ad5d6acc09071b49b2c314e5bebcaaaa7ce4cc..b5bdcf238e9a9176116f50f869c03210ec2b6bb6 100644
--- a/man/addColsToProb-methods.Rd
+++ b/man/addColsToProb-methods.Rd
@@ -74,9 +74,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addExchReact.Rd b/man/addExchReact.Rd
index 6f901b8f00d035fd675dc7e5ed37f60785a702d1..5c7370d7f2cdfeeef36c520af098ce709ce92270 100644
--- a/man/addExchReact.Rd
+++ b/man/addExchReact.Rd
@@ -60,7 +60,12 @@
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}} and \code{\link{addReact}}
diff --git a/man/addReact.Rd b/man/addReact.Rd
index 8f286da4114ac80efb1846a1914f09c74105f9a4..5e10126c735b9d0daa2a63687b3162484e6a4d61 100644
--- a/man/addReact.Rd
+++ b/man/addReact.Rd
@@ -137,7 +137,12 @@ shrinkMatrix(modelNew, j="newReact")
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}} and \code{\link{rmReact}}
diff --git a/man/addRows-methods.Rd b/man/addRows-methods.Rd
index 3e94474ac2543b70a290540a686fd803f660d44e..15b3b2de099f740f31f23f754df6d9dbb5111ebd 100644
--- a/man/addRows-methods.Rd
+++ b/man/addRows-methods.Rd
@@ -54,9 +54,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addRowsCols-methods.Rd b/man/addRowsCols-methods.Rd
index f1c6583728ac72cabdddbdffbf86dac7486edd27..1b4a51bc60f43bbb757a7c8997c7cc912e4f0a5b 100644
--- a/man/addRowsCols-methods.Rd
+++ b/man/addRowsCols-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addRowsToProb-methods.Rd b/man/addRowsToProb-methods.Rd
index b035e59e636c6f52264c91610faf0bb16472b328..6f2d6b869683b7aa6547e3d30d6c8e33f297b691 100644
--- a/man/addRowsToProb-methods.Rd
+++ b/man/addRowsToProb-methods.Rd
@@ -86,9 +86,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/addSolver.Rd b/man/addSolver.Rd
index c40179fcbee72a6b0575b27b37a4e3dad45a66c2..528f36a4a2b944fc90e3a2094cd68b81d7b50f25 100644
--- a/man/addSolver.Rd
+++ b/man/addSolver.Rd
@@ -42,7 +42,12 @@
The function returns \code{NULL} invisibly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{SYBIL_SETTINGS}}
diff --git a/man/applyChanges-methods.Rd b/man/applyChanges-methods.Rd
index d5b3e9ba3f641f12dae52a261243b629a6cf6983..99d5bbf89edd02855e18226da92c1463fb625928 100644
--- a/man/applyChanges-methods.Rd
+++ b/man/applyChanges-methods.Rd
@@ -130,9 +130,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{sysBiolAlg}} and \code{\link{resetChanges}}
}
diff --git a/man/backupProb-methods.Rd b/man/backupProb-methods.Rd
index 25f163f697833b042a70f4ad4099772e31823b39..d9ed9d68b0204aee6d7240c66b0919a0c0b48010 100644
--- a/man/backupProb-methods.Rd
+++ b/man/backupProb-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/blockedReact.Rd b/man/blockedReact.Rd
index 6f9a972390c0ab14b9502237e025dadc4edb55f2..b461f2bc317ac356b094515dabcac3654a55a86f 100644
--- a/man/blockedReact.Rd
+++ b/man/blockedReact.Rd
@@ -74,9 +74,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{modelorg}},
\code{\linkS4class{optsol_blockedReact}} and
diff --git a/man/changeBounds.Rd b/man/changeBounds.Rd
index 58d4d44f07f55fdb9a17ee3afcc14f4e59e97dce..c15ae4da932b5433df10aff9c0cb23ab8513d2bc 100644
--- a/man/changeBounds.Rd
+++ b/man/changeBounds.Rd
@@ -49,7 +49,12 @@
\code{lpmodel}) containing the new objective function.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/changeColsBnds-methods.Rd b/man/changeColsBnds-methods.Rd
index ffae5ab3961765a5c32055257b8640fc39a5010d..75e09629b4191681ca74ae2c30492f0c8c587375 100644
--- a/man/changeColsBnds-methods.Rd
+++ b/man/changeColsBnds-methods.Rd
@@ -62,9 +62,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeColsBndsObjCoefs-methods.Rd b/man/changeColsBndsObjCoefs-methods.Rd
index 2b42142e179db04ad0cd6d3f88beb946a3bdca78..c7156a9876b2b701f89a3baea5a9e16f13bfae85 100644
--- a/man/changeColsBndsObjCoefs-methods.Rd
+++ b/man/changeColsBndsObjCoefs-methods.Rd
@@ -70,9 +70,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeGPR.Rd b/man/changeGPR.Rd
index cf5eb14fbfbef0567f4e6187773262a70029ae4c..ecf88c21b42ac145c29e46ce3cf09c8e9fdbd830 100644
--- a/man/changeGPR.Rd
+++ b/man/changeGPR.Rd
@@ -28,5 +28,10 @@
Then the changes are executed.
}
-\author{Benjamin Braasch}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
diff --git a/man/changeMatrixRow-methods.Rd b/man/changeMatrixRow-methods.Rd
index d3d3be15037737e7123170e81506440b179de466..de2a939f0410d5a56e6e775c50b80a4ae7e14e7e 100644
--- a/man/changeMatrixRow-methods.Rd
+++ b/man/changeMatrixRow-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeObjCoefs-methods.Rd b/man/changeObjCoefs-methods.Rd
index eaeff4019a91879d22ddca2be1040be2a8419b00..65f9390da344c9fb602ac601d118e7cc5b10017e 100644
--- a/man/changeObjCoefs-methods.Rd
+++ b/man/changeObjCoefs-methods.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeObjFunc.Rd b/man/changeObjFunc.Rd
index 54e2945803a6269dcdb38fe8f24a108d07170dff..0551bfb5b8101f0a56073dc811c5dbe204a80621 100644
--- a/man/changeObjFunc.Rd
+++ b/man/changeObjFunc.Rd
@@ -44,7 +44,12 @@
Returns the given model containing the new objective function.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/changeRowsBnds-methods.Rd b/man/changeRowsBnds-methods.Rd
index 178814b30d7027eccb5209f2515960b1bbbae4ee..81219a3c508fe21e8d26aeceb3b823e7cac5fc22 100644
--- a/man/changeRowsBnds-methods.Rd
+++ b/man/changeRowsBnds-methods.Rd
@@ -66,9 +66,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/changeUptake-methods.Rd b/man/changeUptake-methods.Rd
index 24d29ea0c863b867eb2f62ea6857f2e251da9aac..5dc9d7bd4640ac11fb6a1eec9c6912d90957ef5e 100644
--- a/man/changeUptake-methods.Rd
+++ b/man/changeUptake-methods.Rd
@@ -55,9 +55,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\value{
An object of class \code{\linkS4class{modelorg}}.
}
diff --git a/man/checkAkgorithm.Rd b/man/checkAkgorithm.Rd
index 0b450c171db4e4d0d2225c228fe5e9ad7a0aa0aa..f741d634d6121aae06bfe8f648120bc7c0339587 100644
--- a/man/checkAkgorithm.Rd
+++ b/man/checkAkgorithm.Rd
@@ -27,9 +27,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{addAlgorithm}}, \code{\link{getsybilenv}}
}
diff --git a/man/checkDefaultMethod.Rd b/man/checkDefaultMethod.Rd
index 9ccae53d734571e5dd6e6685240bdf35a3459288..66ead138e47a550b41511415c964cabc6414c845 100644
--- a/man/checkDefaultMethod.Rd
+++ b/man/checkDefaultMethod.Rd
@@ -64,11 +64,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
- Maintainer: Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{SYBIL_SETTINGS}} and \code{\link{getsybilenv}}
}
diff --git a/man/checkOptSol-methods.Rd b/man/checkOptSol-methods.Rd
index 21637304d05015d80797557080c1e6926c11499b..ae86bd489f38114ee5221b54a4b25853de497a4f 100644
--- a/man/checkOptSol-methods.Rd
+++ b/man/checkOptSol-methods.Rd
@@ -54,7 +54,12 @@
\code{\linkS4class{checksol}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{checksol}},
diff --git a/man/checkReactId.Rd b/man/checkReactId.Rd
index 42efec499995c3136ab48b7710f12e21edac5950..7fa46419fa7349584014f80366a28b7ab9ac85f6 100644
--- a/man/checkReactId.Rd
+++ b/man/checkReactId.Rd
@@ -38,7 +38,12 @@
\code{react} contains any reactions not in \code{model}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\linkS4class{reactId}}}
diff --git a/man/checksol-class.Rd b/man/checksol-class.Rd
index e8c8b325b531d2d8bd0622b08dc5d9b5f27055b8..25dba127a0d2a80fb36746bd93ddf0c40dbd001f 100644
--- a/man/checksol-class.Rd
+++ b/man/checksol-class.Rd
@@ -122,7 +122,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkOptSol}}}
diff --git a/man/deadEndMetabolites-methods.Rd b/man/deadEndMetabolites-methods.Rd
index 483a9b1f1f68e6aa9b6b1881e9134892862796c3..4ed4c0b9343ae3d3832f556264041332368728fc 100644
--- a/man/deadEndMetabolites-methods.Rd
+++ b/man/deadEndMetabolites-methods.Rd
@@ -44,9 +44,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{modelorg}} and \code{\link{readTSVmod}}.
}
diff --git a/man/delProb-methods.Rd b/man/delProb-methods.Rd
index 0ca6be196bb04af248d824fbaa0717990961e0fa..e8086432135e6867f64b3f531e4ca5eb17196a84 100644
--- a/man/delProb-methods.Rd
+++ b/man/delProb-methods.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/deprecated.Rd b/man/deprecated.Rd
index 7c707ae383834c4a8825b670c6e33502f44e7651..2c0e94db6fa48caac34a9d65f6286cec5670dbe6 100644
--- a/man/deprecated.Rd
+++ b/man/deprecated.Rd
@@ -19,9 +19,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{Deprecated}}
}
diff --git a/man/doubleFluxDel.Rd b/man/doubleFluxDel.Rd
index 419cd37842b43c3f95554a1d10362c884a108411..9395ed06ed829a41e2e0737c0390c6c325cb08f3 100644
--- a/man/doubleFluxDel.Rd
+++ b/man/doubleFluxDel.Rd
@@ -81,7 +81,12 @@
An object of class \code{\linkS4class{optsol_fluxdel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/doubleGeneDel.Rd b/man/doubleGeneDel.Rd
index 6a093ad01225304f278b9207e1a2e0630369a5d5..eddaf4ae2940fa5a30300465310070d616ca690d 100644
--- a/man/doubleGeneDel.Rd
+++ b/man/doubleGeneDel.Rd
@@ -95,7 +95,12 @@
An object of class \code{\linkS4class{optsol_genedel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/doubleReact.Rd b/man/doubleReact.Rd
index 8494feed645d91817a06baa084dcc9fc157c52a3..b88f7eed9d023257346297ab2d6209f8cf70ff36 100644
--- a/man/doubleReact.Rd
+++ b/man/doubleReact.Rd
@@ -57,7 +57,12 @@
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\note{
At the moment, the directions of a pair of reactions is not
diff --git a/man/editEnvir.Rd b/man/editEnvir.Rd
index d5acbbb4c2dd7c90b0dc8193c4b31e893ca83bbd..a77af883ecd2c332ca0a45d36dc6d2c9272063e8 100644
--- a/man/editEnvir.Rd
+++ b/man/editEnvir.Rd
@@ -29,7 +29,12 @@
An object of class \code{\linkS4class{modelorg}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/findExchReact.Rd b/man/findExchReact.Rd
index 2e320ce7798c614614a92632b7536d63abcd9e9b..3d35a780b5bfd1d26f559d7e8b3c3a7ef5aa38da 100644
--- a/man/findExchReact.Rd
+++ b/man/findExchReact.Rd
@@ -69,5 +69,10 @@
getFluxDist(opt, ex)
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
diff --git a/man/fluxDistribution-class.Rd b/man/fluxDistribution-class.Rd
index 8654dd9258159b46a5afe9516c457b5748d0f846..6c1dc2733c53ec7cb417da72b56822e8bd90b1e1 100644
--- a/man/fluxDistribution-class.Rd
+++ b/man/fluxDistribution-class.Rd
@@ -83,7 +83,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
showClass("fluxDistribution")
diff --git a/man/fluxVar.Rd b/man/fluxVar.Rd
index cad64c6280b2b2683b3031a414c2defdecdcc637..b721fca561eab3c1aea77083ade39082ec126fbb 100644
--- a/man/fluxVar.Rd
+++ b/man/fluxVar.Rd
@@ -67,7 +67,12 @@
Cambridge University Press.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
data(Ec_core)
diff --git a/man/geneDel.Rd b/man/geneDel.Rd
index 3a8ddb087b3ba86ee5dc92c552a4a854831354fb..ec9fe8b56090c9797cbfbb26d2f9804146ef16fd 100644
--- a/man/geneDel.Rd
+++ b/man/geneDel.Rd
@@ -49,9 +49,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{optimizer}}
}
diff --git a/man/geneDeletion.Rd b/man/geneDeletion.Rd
index 4e5047713657715bf1ecf69e70eec3c4eb4a0fd5..7c59b4f3e19771400de705699288dd9ec9cc4810 100644
--- a/man/geneDeletion.Rd
+++ b/man/geneDeletion.Rd
@@ -89,7 +89,12 @@
An object of class \code{\linkS4class{optsol_genedel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/getColPrim-methods.Rd b/man/getColPrim-methods.Rd
index 92b4aa7ed513c1d4c454ec5147505519ba4fb54f..479d380a20a29180b6a4ec2650407c9b7083f320 100644
--- a/man/getColPrim-methods.Rd
+++ b/man/getColPrim-methods.Rd
@@ -58,9 +58,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getColsLowBnds-methods.Rd b/man/getColsLowBnds-methods.Rd
index aeb376c31eb80a9aae16083342d3bf0f3fd08a93..8c38b9cb02d14bbd7d4e0e49afbad0493058359c 100644
--- a/man/getColsLowBnds-methods.Rd
+++ b/man/getColsLowBnds-methods.Rd
@@ -58,9 +58,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getColsNames-methods.Rd b/man/getColsNames-methods.Rd
index 0fa699d62efc196930c6caa603aceed257e6c025..05a7a3d3247983c1c6fe7d24509008706a25d4a2 100644
--- a/man/getColsNames-methods.Rd
+++ b/man/getColsNames-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getColsUppBnds-methods.Rd b/man/getColsUppBnds-methods.Rd
index 26b8e25cd9fda2472d87c6709abcab4979349d6b..51e9dcc99979c6e4dbe7d5b11b76d5844c5e5d21 100644
--- a/man/getColsUppBnds-methods.Rd
+++ b/man/getColsUppBnds-methods.Rd
@@ -58,9 +58,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getFluxDist-methods.Rd b/man/getFluxDist-methods.Rd
index 87e92832f4769a5fb3cab915dbad00331dcf0d5e..eaa11c4a41e93bd8213d5d441d62183b0f7ae64e 100644
--- a/man/getFluxDist-methods.Rd
+++ b/man/getFluxDist-methods.Rd
@@ -83,9 +83,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getNumCols-methods.Rd b/man/getNumCols-methods.Rd
index bc8597c8ca8c52fb05f992ef19689aaaff9628d2..db2813ee51cc4f28f248872ad65813e55cd24a4b 100644
--- a/man/getNumCols-methods.Rd
+++ b/man/getNumCols-methods.Rd
@@ -55,9 +55,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getNumNnz-methods.Rd b/man/getNumNnz-methods.Rd
index fd39afd082d002e5a3a634eeacf78b8ddcb8f7b0..c7906cfb864d492e7b116adf0cd7490dd358b7bc 100644
--- a/man/getNumNnz-methods.Rd
+++ b/man/getNumNnz-methods.Rd
@@ -50,9 +50,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getNumRows-methods.Rd b/man/getNumRows-methods.Rd
index 3e6e375af4b67e17090585218e1c7d972493bc9c..455b8d364d12d88aa97f9d41875e9f36d55a619e 100644
--- a/man/getNumRows-methods.Rd
+++ b/man/getNumRows-methods.Rd
@@ -55,9 +55,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getObjCoefs-methods.Rd b/man/getObjCoefs-methods.Rd
index ff2c85a49db5fa398251433e68df4b3a6081f7c9..1ea7d8d53193e6815c8eeb40ed67985b9370706b 100644
--- a/man/getObjCoefs-methods.Rd
+++ b/man/getObjCoefs-methods.Rd
@@ -58,9 +58,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getObjDir-methods.Rd b/man/getObjDir-methods.Rd
index 2411dee79af95ddb0946ebdb8d29e85851ee0c4b..4dbad8a0a0cf9240506b3fb08bae4b17b126a153 100644
--- a/man/getObjDir-methods.Rd
+++ b/man/getObjDir-methods.Rd
@@ -56,9 +56,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getObjVal-methods.Rd b/man/getObjVal-methods.Rd
index e5d7d671e5a0df8ef55c0af0aa58515dd097733d..d778cd178e5c83124fbd2bc5e81c0fcbc1783862 100644
--- a/man/getObjVal-methods.Rd
+++ b/man/getObjVal-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getRedCosts-methods.Rd b/man/getRedCosts-methods.Rd
index b8fa3141667b71958025c1ea89d4361c0aa41557..c1dd72b255c2d815cdcd02606cee4c865dc76866 100644
--- a/man/getRedCosts-methods.Rd
+++ b/man/getRedCosts-methods.Rd
@@ -51,9 +51,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\value{
A numeric vector containing the reduced costs of all variables.
}
diff --git a/man/getRowsLowBnds-methods.Rd b/man/getRowsLowBnds-methods.Rd
index 33ddaa1a89ca4660e7566dfacc5876e012dc1b2b..90ec08e4ee3e87ca0d1af1be1139075ab84511f6 100644
--- a/man/getRowsLowBnds-methods.Rd
+++ b/man/getRowsLowBnds-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getRowsNames-methods.Rd b/man/getRowsNames-methods.Rd
index ec1a2f628d8f6fb441014194ef95c5159f049da9..799217bd685aa091dbe4d760b33175364d58fded 100644
--- a/man/getRowsNames-methods.Rd
+++ b/man/getRowsNames-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getRowsUppBnds-methods.Rd b/man/getRowsUppBnds-methods.Rd
index 6a9a36d27aa6b7a01b6ece24a016f1334230f5ca..c321206861bf2a7dc284134f3d8d63624b306f0c 100644
--- a/man/getRowsUppBnds-methods.Rd
+++ b/man/getRowsUppBnds-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getSolStat-methods.Rd b/man/getSolStat-methods.Rd
index 6922a8ae6357a246376966d35ed2237c2d9be230..b3942fbcdebed75f00bd03b7b360457c645afb99 100644
--- a/man/getSolStat-methods.Rd
+++ b/man/getSolStat-methods.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Function \code{\link{getMeanStatus}} and superclass
\code{\linkS4class{optObj}} and constructor function
diff --git a/man/getSolverParm-methods.Rd b/man/getSolverParm-methods.Rd
index bff9414989eb6ea8182a857fc43a67c027212710..f1a7fd2864c087323eac00bf35575881f39997df 100644
--- a/man/getSolverParm-methods.Rd
+++ b/man/getSolverParm-methods.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/getsybilenv.Rd b/man/getsybilenv.Rd
index 1f86355893d205688bda0b956dfa00a36273f7bf..e798230ede4f135ce60b04d8410547b80792379e 100644
--- a/man/getsybilenv.Rd
+++ b/man/getsybilenv.Rd
@@ -48,7 +48,12 @@
Returns \code{NULL} invisibly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{addSolver}}, \code{\link{checkDefaultMethod}}
diff --git a/man/initProb-methods.Rd b/man/initProb-methods.Rd
index a8e39e0d5df7f810f6b027190620cb8ca4683989..dfea6fc78a0fa31723a2ec72863cb363acfe32a3 100644
--- a/man/initProb-methods.Rd
+++ b/man/initProb-methods.Rd
@@ -78,9 +78,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/loadLPprob-methods.Rd b/man/loadLPprob-methods.Rd
index 54f93a544c4f1d82225cc4c211e39e260cdf28ad..5df57cc41268ee1d6467faf955e16e0efdafd044 100644
--- a/man/loadLPprob-methods.Rd
+++ b/man/loadLPprob-methods.Rd
@@ -207,9 +207,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/loadQobj-methods.Rd b/man/loadQobj-methods.Rd
index 8e0b9e444ae1280dcd20aeae7ef347af6c4e58ce..09550c0d3cd395881c7db23021e803cef4671a34 100644
--- a/man/loadQobj-methods.Rd
+++ b/man/loadQobj-methods.Rd
@@ -44,9 +44,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/makeOptsolMO.Rd b/man/makeOptsolMO.Rd
index b36a0c95be16a9d68f6b645653c06740e9c4613f..b464a41d504901eddb2c8e569db574016f371d00 100644
--- a/man/makeOptsolMO.Rd
+++ b/man/makeOptsolMO.Rd
@@ -27,7 +27,12 @@
An object of class \code{\linkS4class{optsol_optimizeProb}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Class \code{\linkS4class{optsol_optimizeProb}},
diff --git a/man/mod2irrev.Rd b/man/mod2irrev.Rd
index ec40662375e541ba8772b73cbef4e2e0812ad777..ec9e145cdffb538fb94c8a8087da2b706e053af3 100644
--- a/man/mod2irrev.Rd
+++ b/man/mod2irrev.Rd
@@ -50,7 +50,12 @@
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich, Markus Herrgard}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\linkS4class{modelorg_irrev}}}
diff --git a/man/modelorg-class.Rd b/man/modelorg-class.Rd
index 0a8474f3bc9f747fbd3673baf152d10dff1cb14b..2b34679cdd15c76cc57bf68f1f1b1baf6445bab1 100644
--- a/man/modelorg-class.Rd
+++ b/man/modelorg-class.Rd
@@ -433,7 +433,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg_irrev}} for models in irreversible format.
diff --git a/man/modelorg2ExPA.Rd b/man/modelorg2ExPA.Rd
index 4d88990867f467fa387d5c06efef1affd584f4da..804bb2a6308352726a97fdf4990e7f45501d7e0b 100644
--- a/man/modelorg2ExPA.Rd
+++ b/man/modelorg2ExPA.Rd
@@ -70,7 +70,10 @@
}
\author{
- Gabriel Gelius-Dietrich, C. Jonathan Fritzemeier
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\keyword{ IO }
diff --git a/man/modelorg2tsv.Rd b/man/modelorg2tsv.Rd
index 52c745cd8870486365792a9ee08da034f1d3d7eb..32423dd7cd43c346a9ae5051a32847c9bb4cfba8 100644
--- a/man/modelorg2tsv.Rd
+++ b/man/modelorg2tsv.Rd
@@ -151,9 +151,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{read.table}}, \code{\link{modelorg2tsv}}, \code{\link{modelorg}}.
}
diff --git a/man/modelorg_irrev-class.Rd b/man/modelorg_irrev-class.Rd
index b4c76bdb7a52ea718be9c45f4b983b98f6a5a1fc..9fae8c4be4298d097b99019da2775d9509460495 100644
--- a/man/modelorg_irrev-class.Rd
+++ b/man/modelorg_irrev-class.Rd
@@ -96,7 +96,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}}
diff --git a/man/multiDel.Rd b/man/multiDel.Rd
index a60d0349bd4d77307fcbe6fe2f601cde430e12c2..6774846c9258fd87ddc1950af0f32c3c1ce8a4aa 100644
--- a/man/multiDel.Rd
+++ b/man/multiDel.Rd
@@ -59,9 +59,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{mclapply}}, \code{\linkS4class{optsol}}, \code{\link{oneGeneDel}},
\code{\link{doubleGeneDel}}, \code{\link{oneFluxDel}},
diff --git a/man/netFlux-class.Rd b/man/netFlux-class.Rd
index 699896e891dd7a83fc95a0c9e1f32faa8ab04e5d..ca82318d2c319e3cbcedd2847254710aae77d6e1 100644
--- a/man/netFlux-class.Rd
+++ b/man/netFlux-class.Rd
@@ -70,7 +70,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{optimizeProb}}, \code{\link{getFluxDist}}
diff --git a/man/oneFluxDel.Rd b/man/oneFluxDel.Rd
index eafe5b72afa430f548a9a45858e688a77f1f751c..7138b3be32d2616f550843925cd0336179f90d9c 100644
--- a/man/oneFluxDel.Rd
+++ b/man/oneFluxDel.Rd
@@ -63,7 +63,12 @@
An object of class \code{\linkS4class{optsol_fluxdel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/oneGeneDel.Rd b/man/oneGeneDel.Rd
index eb13f5d3566b648d95a3ed3c2515a765b2243010..adc8d69933a7e98a9f76c521b45be71d0c383b76 100644
--- a/man/oneGeneDel.Rd
+++ b/man/oneGeneDel.Rd
@@ -65,7 +65,12 @@
An object of class \code{\linkS4class{optsol_genedel}}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{modelorg}}, \code{\linkS4class{optsol}},
diff --git a/man/onlyChangeGPR.Rd b/man/onlyChangeGPR.Rd
index 643ab9edf9424613c12a8508220ead3c7965ad83..26290315fe64668a29c068a630eb1c51be2dfeae 100644
--- a/man/onlyChangeGPR.Rd
+++ b/man/onlyChangeGPR.Rd
@@ -27,6 +27,11 @@
Use onlyCheckGPR first to check the expressions.
}
-\author{Benjamin Braasch}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\keyword{change}
diff --git a/man/onlyCheckGPR.Rd b/man/onlyCheckGPR.Rd
index 46a05cb3499d9a5680c26c8e7aa368a4bfcdd5d1..e8387f90f8c026f5757974040101de22aaec125a 100644
--- a/man/onlyCheckGPR.Rd
+++ b/man/onlyCheckGPR.Rd
@@ -25,6 +25,11 @@
The function checks the expressions for the chosen reactions.
}
-\author{Benjamin Braasch}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\keyword{check}
diff --git a/man/optObj-class.Rd b/man/optObj-class.Rd
index 6207d6a97ae151c0304dd2653b81125c7d59b352..e74756420508a136b5e74f1244b5f147319c804a 100644
--- a/man/optObj-class.Rd
+++ b/man/optObj-class.Rd
@@ -276,7 +276,12 @@
\code{lp@oobj@env}.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
The constructor function \code{\link{sysBiolAlg}} for objects extending
diff --git a/man/optObj.Rd b/man/optObj.Rd
index 664d846e0d4ee8536f8cb41c53b31336cda4a9dd..2848497fb9cbcfed6fead95f2f0a334b0b7d642d 100644
--- a/man/optObj.Rd
+++ b/man/optObj.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{optObj}}, \code{\link{SYBIL_SETTINGS}}
and \code{\link{checkDefaultMethod}}.
diff --git a/man/optObj_clpAPI-class.Rd b/man/optObj_clpAPI-class.Rd
index 2f8e08c2d55a74531929a77e5ab756dfd8024ad9..7419e9f23080d91c0c6bd127bb853840ca14115f 100644
--- a/man/optObj_clpAPI-class.Rd
+++ b/man/optObj_clpAPI-class.Rd
@@ -44,7 +44,12 @@
Class \code{"\linkS4class{optObj}"}, directly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
diff --git a/man/optObj_cplexAPI-class.Rd b/man/optObj_cplexAPI-class.Rd
index a0da30e575cc0172670ffec9485e1ef32f867288..0129f47bd6397d8daebc1baefbe4e44a747921ca 100644
--- a/man/optObj_cplexAPI-class.Rd
+++ b/man/optObj_cplexAPI-class.Rd
@@ -44,7 +44,12 @@
Class \code{"\linkS4class{optObj}"}, directly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
diff --git a/man/optObj_glpkAPI-class.Rd b/man/optObj_glpkAPI-class.Rd
index 4b1fcf8b0c2d871433adbcace71560dcb381d057..94004015a20a62b562b5a8044afdbf622ed1f32e 100644
--- a/man/optObj_glpkAPI-class.Rd
+++ b/man/optObj_glpkAPI-class.Rd
@@ -44,7 +44,12 @@
Class \code{"\linkS4class{optObj}"}, directly.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
diff --git a/man/optObj_lpSolveAPI-class.Rd b/man/optObj_lpSolveAPI-class.Rd
index 4d7d8275a56e04f3e40c071ec950010f5902fb0c..5e1e24783abfea12c03a536812aeef65d3fe392e 100644
--- a/man/optObj_lpSolveAPI-class.Rd
+++ b/man/optObj_lpSolveAPI-class.Rd
@@ -59,7 +59,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
diff --git a/man/optimizeProb-methods.Rd b/man/optimizeProb-methods.Rd
index 7561b762f381ef41e6c06657ae56903cdaa098e2..49b7e60bfbc92c5438dbeb1e3087244eb463ceaa 100644
--- a/man/optimizeProb-methods.Rd
+++ b/man/optimizeProb-methods.Rd
@@ -286,9 +286,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{modelorg}}, \code{\link{applyChanges}} and \code{\linkS4class{sysBiolAlg}}.
}
diff --git a/man/optimizer.Rd b/man/optimizer.Rd
index 5c8cac3e6e12924c2e3d3ede0df02909ce007967..11d877dff7947905ea389108b3f212a4890a08fb 100644
--- a/man/optimizer.Rd
+++ b/man/optimizer.Rd
@@ -240,7 +240,12 @@ optimizer(model, react, lb, ub, obj_coef, lpdir,
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
Class \code{\linkS4class{sysBiolAlg}}, and constructor function
diff --git a/man/optsol-class.Rd b/man/optsol-class.Rd
index 7b93e5322f8ec72dc59d485a5fb7ab5f27e062af..a18a9332e8053eeac5b36b5884130fc42ea7f680 100644
--- a/man/optsol-class.Rd
+++ b/man/optsol-class.Rd
@@ -320,7 +320,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}},
diff --git a/man/optsol_blockedReact-class.Rd b/man/optsol_blockedReact-class.Rd
index c7823a666d9897ed0ce86821d577aa80d0e99e21..4f0450be7700183b3a2be87f953bd530aee89247 100644
--- a/man/optsol_blockedReact-class.Rd
+++ b/man/optsol_blockedReact-class.Rd
@@ -134,7 +134,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}} and \code{\linkS4class{optsol}}
diff --git a/man/optsol_fluxVar-class.Rd b/man/optsol_fluxVar-class.Rd
index 425ec630a6116138a965570520d07429d98efa16..86f33e0ea2a9de48327d07be732e3e50b5d7cf7d 100644
--- a/man/optsol_fluxVar-class.Rd
+++ b/man/optsol_fluxVar-class.Rd
@@ -209,7 +209,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}} and \code{\linkS4class{optsol}}
diff --git a/man/optsol_fluxdel-class.Rd b/man/optsol_fluxdel-class.Rd
index e7edb43cc449a72857ee343c6886b5663677858b..16289f9ca605d825e119c42bfdd8a4c9c1105962 100644
--- a/man/optsol_fluxdel-class.Rd
+++ b/man/optsol_fluxdel-class.Rd
@@ -193,7 +193,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}},
diff --git a/man/optsol_genedel-class.Rd b/man/optsol_genedel-class.Rd
index 0e71588b38c2d54d904a8f24257cd77935ffc605..4ffee8298b62dfe69f20f26f7164f25dd941830c 100644
--- a/man/optsol_genedel-class.Rd
+++ b/man/optsol_genedel-class.Rd
@@ -168,7 +168,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}},
diff --git a/man/optsol_optimizeProb-class.Rd b/man/optsol_optimizeProb-class.Rd
index 9eae26fac18abbc4b9c47a56eceebeea7133ce49..c36e3912a78dfb855dcde169ed8eee555f5ef2f8 100644
--- a/man/optsol_optimizeProb-class.Rd
+++ b/man/optsol_optimizeProb-class.Rd
@@ -124,7 +124,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{checkOptSol}},
diff --git a/man/optsol_phpp-class.Rd b/man/optsol_phpp-class.Rd
index 42fee8c84352c680599facdf5abfbe626d9f3ba0..bf5472108cb0b923944fe8ce7f3b9d8d6b4f8831 100644
--- a/man/optsol_phpp-class.Rd
+++ b/man/optsol_phpp-class.Rd
@@ -205,7 +205,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{phpp}}, \code{\link{checkOptSol}} and \code{\linkS4class{optsol}}
diff --git a/man/optsol_robAna-class.Rd b/man/optsol_robAna-class.Rd
index 0c3e22eec45bb3aa64987b1af84994087349e592..cd3060c90f1d550b2e4bbf415666090e69074c8a 100644
--- a/man/optsol_robAna-class.Rd
+++ b/man/optsol_robAna-class.Rd
@@ -165,7 +165,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{robAna}}, \code{\link{checkOptSol}} and
diff --git a/man/phpp.Rd b/man/phpp.Rd
index de547f4c0dd01fee80d1a733ed994016fc5bd8a0..874cec53859289a67e75e933665fa77ee34d680b 100644
--- a/man/phpp.Rd
+++ b/man/phpp.Rd
@@ -86,7 +86,12 @@ phpp(model, ctrlreact, rng = c(0, 0, 20, 20),
Cambridge University Press.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
data(Ec_core)
diff --git a/man/ppProc-class.Rd b/man/ppProc-class.Rd
index 6f0ee9a5e03ce8545d47ae8b996fdf40acb4add7..7bb4b2efcc4105f8d450627a3429dfa85b4a2a98 100644
--- a/man/ppProc-class.Rd
+++ b/man/ppProc-class.Rd
@@ -79,7 +79,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{optimizeProb}} and \code{\link{optimizer}}
diff --git a/man/printMetabolite-methods.Rd b/man/printMetabolite-methods.Rd
index b4070def44e7426929bf3b4d8c2fcaae2805ea12..71eb2c44ee7fdeae8cdf3fd879e3c7de14511790 100644
--- a/man/printMetabolite-methods.Rd
+++ b/man/printMetabolite-methods.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\value{
The \code{\linkS4class{modelorg}} method returns a character vector of length
equal to the number of metabolites given in argument \code{met}, invisibly.
diff --git a/man/printReaction-methods.Rd b/man/printReaction-methods.Rd
index b9be30ff2238cef428bc698ba441e00b32f5f998..715779ac2661ba3eca2a3e1f10a78952a0ceae79 100644
--- a/man/printReaction-methods.Rd
+++ b/man/printReaction-methods.Rd
@@ -73,9 +73,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\value{
The \code{\linkS4class{modelorg}} method returns invisibly a character vector
of length equal to the number of reactions given in argument \code{react}.
diff --git a/man/promptSysBiolAlg.Rd b/man/promptSysBiolAlg.Rd
index 715b30c5a450795e07f86562da5b06b36e363294..bbecc71e822c5037a8af7b67c8c3ecf37107c57d 100644
--- a/man/promptSysBiolAlg.Rd
+++ b/man/promptSysBiolAlg.Rd
@@ -64,9 +64,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\linkS4class{sysBiolAlg}}
}
diff --git a/man/reactId-class.Rd b/man/reactId-class.Rd
index 459e97e38b535ad615854534a203ac2bd2f49b6f..cff6778f44d6ce9de3bf3cd83f29f9bd6b5d7e4f 100644
--- a/man/reactId-class.Rd
+++ b/man/reactId-class.Rd
@@ -107,7 +107,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/reactId_Exch-class.Rd b/man/reactId_Exch-class.Rd
index 5b9210b4e6f0e13ae64b7385fbca9421e7e05a96..27a86745362f4c8889e3b4fd38e614c678cbd655 100644
--- a/man/reactId_Exch-class.Rd
+++ b/man/reactId_Exch-class.Rd
@@ -190,7 +190,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{\code{\link{checkReactId}}}
diff --git a/man/readProb-methods.Rd b/man/readProb-methods.Rd
index 3b2edbfcd3afbf8a124959f5a9212017c8b4a0c5..d1751961430497946cc133d4516c1f6e8efc6cd6 100644
--- a/man/readProb-methods.Rd
+++ b/man/readProb-methods.Rd
@@ -70,9 +70,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/readTSVmod.Rd b/man/readTSVmod.Rd
index a38df6bb0f7f3862ea4b6170106ca984866d89af..cb200ffab5b69f131865a42cd05290d911d758f2 100644
--- a/man/readTSVmod.Rd
+++ b/man/readTSVmod.Rd
@@ -348,9 +348,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\link{read.table}}, \code{\link{modelorg2tsv}}, \code{\link{modelorg}}
}
diff --git a/man/resetChanges-methods.Rd b/man/resetChanges-methods.Rd
index fdf7385bdef831a81994b27ffd207c5330e8f02e..b3f9ab185e15f064ad32653110fcf1ad6807b782 100644
--- a/man/resetChanges-methods.Rd
+++ b/man/resetChanges-methods.Rd
@@ -47,9 +47,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{sysBiolAlg}} and \code{\link{applyChanges}}
}
diff --git a/man/rmReact.Rd b/man/rmReact.Rd
index 2256479ffd7d3e9683bf7625a2f1af1ee34065cd..ae53c65a933520d58f6d6aa254d9b30ec47bf93a 100644
--- a/man/rmReact.Rd
+++ b/man/rmReact.Rd
@@ -42,7 +42,12 @@
\emph{Nat Protoc} \bold{6}, 1290--1307.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\linkS4class{modelorg}},
diff --git a/man/robAna.Rd b/man/robAna.Rd
index cf5b1c49e19df59b03296fb3897593e9dc99d6af..23f41dd44ca27ed1ce807fe93eaf686829f11b43 100644
--- a/man/robAna.Rd
+++ b/man/robAna.Rd
@@ -102,7 +102,12 @@
Cambridge University Press.
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
data(Ec_core)
diff --git a/man/scaleProb-methods.Rd b/man/scaleProb-methods.Rd
index dea1caade3c71bb5ef688be491e34c0de8525cc8..7d6440bcc2b6276d66e13e1f6de860a27ccfa592 100644
--- a/man/scaleProb-methods.Rd
+++ b/man/scaleProb-methods.Rd
@@ -54,9 +54,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/sensitivityAnalysis-methods.Rd b/man/sensitivityAnalysis-methods.Rd
index 4f7fa4d6a7530f94acde6a1d899b5add5b44175c..0e9033ebb787c38a5acee1600c48303c4e75203c 100644
--- a/man/sensitivityAnalysis-methods.Rd
+++ b/man/sensitivityAnalysis-methods.Rd
@@ -48,9 +48,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setColsNames-methods.Rd b/man/setColsNames-methods.Rd
index 1619b54e9caf05132ec3a2915cb05f7015e90035..b10ab8188fb9b17ca6fc72e9ad2d86c7bb83c57f 100644
--- a/man/setColsNames-methods.Rd
+++ b/man/setColsNames-methods.Rd
@@ -62,9 +62,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setObjDir-methods.Rd b/man/setObjDir-methods.Rd
index 321e2dd583c0a5cad6223576b3e3bac547971012..bc2bbe313ef7aaf114e9ffd775babf085bdcbe53 100644
--- a/man/setObjDir-methods.Rd
+++ b/man/setObjDir-methods.Rd
@@ -103,9 +103,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setRhsZero-methods.Rd b/man/setRhsZero-methods.Rd
index 17ed8c15899e706f7d5baf98cccde74adddc155d..3c54e7b7b9e58fe0cad87d04f1d49041b210e9c9 100644
--- a/man/setRhsZero-methods.Rd
+++ b/man/setRhsZero-methods.Rd
@@ -52,9 +52,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setRowsNames-methods.Rd b/man/setRowsNames-methods.Rd
index 15f935f7447ca1251927b5ee842f0faff23ea61c..0f9255640c6be54c4139d3af03324f76a2c12439 100644
--- a/man/setRowsNames-methods.Rd
+++ b/man/setRowsNames-methods.Rd
@@ -62,9 +62,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/setSolverParm-methods.Rd b/man/setSolverParm-methods.Rd
index c038d4e8c4cdccf951b1acd189dbc24355b716c4..625eaf76e65d70b4ee51f69e6a622b3c0566911f 100644
--- a/man/setSolverParm-methods.Rd
+++ b/man/setSolverParm-methods.Rd
@@ -64,9 +64,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/shrinkMatrix-methods.Rd b/man/shrinkMatrix-methods.Rd
index 1e0f40f237ac7451817f927470d35f5d857a3c3c..754d32b22fa6c24e5297040fcdb87aa9713f34a4 100644
--- a/man/shrinkMatrix-methods.Rd
+++ b/man/shrinkMatrix-methods.Rd
@@ -73,9 +73,12 @@
}
\author{
- Claus Jonathan Fritzemeier, Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{modelorg}}.
}
diff --git a/man/singletonMetabolites-methods.Rd b/man/singletonMetabolites-methods.Rd
index b69519d600bc487c4359446a75c62d8d34813fa3..eec3b801ffdf4d8e4727c14b9f513856c61186b5 100644
--- a/man/singletonMetabolites-methods.Rd
+++ b/man/singletonMetabolites-methods.Rd
@@ -49,9 +49,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{modelorg}} and \code{\link{readTSVmod}}.
}
diff --git a/man/solveLp-methods.Rd b/man/solveLp-methods.Rd
index 8b6a88e50b1beb14f52510f7939d0a6ee67c4afc..add853fd92f0fd1d7a6b0d5f6cef7db75330f95f 100644
--- a/man/solveLp-methods.Rd
+++ b/man/solveLp-methods.Rd
@@ -51,9 +51,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/summaryOptsol-class.Rd b/man/summaryOptsol-class.Rd
index adffc569b1ea9fbe04ece71440d859897e21c532..21d7d5d5447dbbedc7daa6dd2bf495e4e91c9b7f 100644
--- a/man/summaryOptsol-class.Rd
+++ b/man/summaryOptsol-class.Rd
@@ -153,9 +153,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{summaryOptsol}},
class \code{\linkS4class{optsol}} and class \code{\linkS4class{modelorg}}.
diff --git a/man/summaryOptsol.Rd b/man/summaryOptsol.Rd
index d0927d60cbaaabb2552dcb56522cd3d2e7cff01b..583a6aa726692343c6af1edbf3a9e65ff7cff587 100644
--- a/man/summaryOptsol.Rd
+++ b/man/summaryOptsol.Rd
@@ -57,9 +57,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{optsol}}, class \code{\linkS4class{modelorg}} and
class \code{\linkS4class{summaryOptsol}}.
diff --git a/man/sybil-package.Rd b/man/sybil-package.Rd
index 5ccce1498e714086e4b6e6f9b103762fc3365349..e82ab5ae6b1507951937b2fd1d78484f9f412e51 100644
--- a/man/sybil-package.Rd
+++ b/man/sybil-package.Rd
@@ -47,11 +47,12 @@ model <- readTSVmod(prefix = "Ec_core",
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
- Maintainer: geliudie@uni-duesseldorf.de
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\references{
The BiGG database \url{http://bigg.ucsd.edu/}.
diff --git a/man/sybilError-class.Rd b/man/sybilError-class.Rd
index 9f4746fae619179c0bd5699d348b3a90db7bbc40..e6787b78793fcd2f2d24cc36aa5eeb7398926d4c 100644
--- a/man/sybilError-class.Rd
+++ b/man/sybilError-class.Rd
@@ -61,7 +61,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\seealso{
\code{\link{optimizeProb}}
diff --git a/man/sybilLog-class.Rd b/man/sybilLog-class.Rd
index cf0e940a9efa33ecf95032130e9389d340be479b..881c1928912b6a16fee3a1a9d1fa5048942c912e 100644
--- a/man/sybilLog-class.Rd
+++ b/man/sybilLog-class.Rd
@@ -273,7 +273,12 @@
}
}
-\author{Gabriel Gelius-Dietrich}
+\author{
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
+}
+
\examples{
showClass("sybilLog")
diff --git a/man/sybilStack.Rd b/man/sybilStack.Rd
index cfdc31e837ff3bb7326ae7066e953b2148045b30..acaa5bfbc2fcbe174fb3a41f5ca1ffa5c4cb715d 100644
--- a/man/sybilStack.Rd
+++ b/man/sybilStack.Rd
@@ -83,11 +83,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
- Maintainer: Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\examples{
## initialize empty stack named test
stinit("test")
diff --git a/man/sysBiolAlg-class.Rd b/man/sysBiolAlg-class.Rd
index 941efbf46091d9373cd7134d3d4fb5f47e6750ba..32d77de399c3be9367affce5d92c6a9f8331d93e 100644
--- a/man/sysBiolAlg-class.Rd
+++ b/man/sysBiolAlg-class.Rd
@@ -244,9 +244,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
The general constructor function \code{\link{sysBiolAlg}},
and classes
diff --git a/man/sysBiolAlg.Rd b/man/sysBiolAlg.Rd
index 2392cb9e9a6057b0730672d8a3c40aacd75e20c4..acef5e2c73a30961e2602a97036d4a962e64ce92 100644
--- a/man/sysBiolAlg.Rd
+++ b/man/sysBiolAlg.Rd
@@ -60,9 +60,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Class \code{\linkS4class{sysBiolAlg}}
}
diff --git a/man/sysBiolAlg_fba-class.Rd b/man/sysBiolAlg_fba-class.Rd
index ebd156384eb7021c949ac648281bfaba4f49f09a..9544496a5b4a4e0abf1a6c43a5a5e2334a111818 100644
--- a/man/sysBiolAlg_fba-class.Rd
+++ b/man/sysBiolAlg_fba-class.Rd
@@ -147,9 +147,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_fv-class.Rd b/man/sysBiolAlg_fv-class.Rd
index a53ac2a17479dd4b6316ab4ca19e30f5e3ba76f8..018fce993072b0d183a4e59ecbdc99c9e29a03ea 100644
--- a/man/sysBiolAlg_fv-class.Rd
+++ b/man/sysBiolAlg_fv-class.Rd
@@ -175,9 +175,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_lmoma-class.Rd b/man/sysBiolAlg_lmoma-class.Rd
index 7762e20ab38aed36267ffe00bcb15c72c27b5678..8d057b49c53648a43dfad9a68d6b66cd76f62f83 100644
--- a/man/sysBiolAlg_lmoma-class.Rd
+++ b/man/sysBiolAlg_lmoma-class.Rd
@@ -243,9 +243,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_moma-class.Rd b/man/sysBiolAlg_moma-class.Rd
index b05f164561cb054e231db979a1c891186015a5d0..9ff26e7b6bb6580dd115e7612f6a12134f9ef821 100644
--- a/man/sysBiolAlg_moma-class.Rd
+++ b/man/sysBiolAlg_moma-class.Rd
@@ -168,9 +168,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_mtf-class.Rd b/man/sysBiolAlg_mtf-class.Rd
index 285d64681de78f708ccffc372f47e1b68a41f6f0..baf906d90d79a1ee0707a55717f5bae83dfaff09 100644
--- a/man/sysBiolAlg_mtf-class.Rd
+++ b/man/sysBiolAlg_mtf-class.Rd
@@ -202,9 +202,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/sysBiolAlg_room-class.Rd b/man/sysBiolAlg_room-class.Rd
index fd133753794e474ade1652f16b71ac863084b3e6..3f331622995070a1869903d9afc03ed38ea0d392 100644
--- a/man/sysBiolAlg_room-class.Rd
+++ b/man/sysBiolAlg_room-class.Rd
@@ -206,9 +206,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Constructor function \code{\link{sysBiolAlg}} and
superclass \code{\linkS4class{sysBiolAlg}}.
diff --git a/man/writeProb-methods.Rd b/man/writeProb-methods.Rd
index 42c839b7389393c2b67ae6b67fdffadb272d30d8..bcb82d33246780fb249bd954d9ac19deaa66ddc0 100644
--- a/man/writeProb-methods.Rd
+++ b/man/writeProb-methods.Rd
@@ -69,9 +69,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
Superclass \code{\linkS4class{optObj}} and constructor function
\code{\link{optObj}}.
diff --git a/man/ypd.Rd b/man/ypd.Rd
index 5f2ed42bcc890ab0a0960d60e4e4fb7741d4b24c..9eb05ab69d05d13e71f6dc082c0da0de1745a48b 100644
--- a/man/ypd.Rd
+++ b/man/ypd.Rd
@@ -128,9 +128,12 @@
}
\author{
- Gabriel Gelius-Dietrich
+ Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
+
+ Maintainer: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
}
+
\seealso{
\code{\linkS4class{modelorg}}, \code{\link{findExchReact}} and
\code{\link{SYBIL_SETTINGS}}