From 36c80bc83897c84adad8716e0dc6b9b5100cce37 Mon Sep 17 00:00:00 2001
From: Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@hhu.de>
Date: Fri, 24 Mar 2017 16:14:56 +0100
Subject: [PATCH] bug in mod2irrev when models have one gene only
---
DESCRIPTION | 6 +++---
R/mod2irrev.R | 2 +-
inst/NEWS.Rd | 6 ++++++
man/checkOptSol-methods.Rd | 2 +-
4 files changed, 11 insertions(+), 5 deletions(-)
diff --git a/DESCRIPTION b/DESCRIPTION
index e0b94d9..a1ac9ad 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,8 +1,8 @@
Package: sybil
Type: Package
Title: Efficient Constrained Based Modelling in R
-Version: 2.0.1
-Date: 2016-05-25
+Version: 2.0.2
+Date: 2017-03-24
Authors@R: c(
person(c("C.", "Jonathan"), "Fritzemeier", role = c("cre", "ctb"), email = "clausjonathan.fritzemeier@uni-duesseldorf.de"),
person("Gabriel", "Gelius-Dietrich", role = c("aut")),
@@ -53,7 +53,7 @@ Collate: generics.R validmodelorg.R validoptsol.R validreactId.R
sysBiolAlg_lmomaClass.R sysBiolAlg_momaClass.R
sysBiolAlg_mtfClass.R sysBiolAlg_mtfEasyConstraintClass.R
sysBiolAlg_roomClass.R sybilLogClass.R upgradeModelorg.R
-Packaged: 2016-05-25 12:34:14 UTC; jonathan
+Packaged: 2017-03-24 12:34:14 UTC; jonathan
Author: C. Jonathan Fritzemeier [cre, ctb],
Gabriel Gelius-Dietrich [aut],
Rajen Piernikarczyk [ctb],
diff --git a/R/mod2irrev.R b/R/mod2irrev.R
index 0d63548..658b10a 100644
--- a/R/mod2irrev.R
+++ b/R/mod2irrev.R
@@ -245,7 +245,7 @@ mod2irrev <- function(model, exex = FALSE) {
allGenes(modelIr) <- allGenes(model)
rxnG_temp <- rxnGeneMat(model)
- rxnG_temp <- rxnG_temp[irrev2rev(modelIr),]
+ rxnG_temp <- rxnG_temp[irrev2rev(modelIr), ,drop=FALSE]
#rxnG_temp <- rxnG_temp[irrev2rev,]
rxnGeneMat(modelIr) <- rxnG_temp
diff --git a/inst/NEWS.Rd b/inst/NEWS.Rd
index 7e44a59..c98743f 100644
--- a/inst/NEWS.Rd
+++ b/inst/NEWS.Rd
@@ -6,6 +6,12 @@
\newcommand{\CRANpkg}{\href{http://CRAN.R-project.org/package=#1}{\pkg{#1}}}
+\section{Changes in version 2.0.2 2017-03-24}{
+ \itemize{
+ \item The function \code{mod2irrev} crashed when using models with just one gene.
+ }
+}
+% ---------------------------------------------------------------------------- %
\section{Changes in version 2.0.1 2016-07-05}{
\itemize{
\item After \code{rmReact} the columns of \code{rxnGeneMat} and
diff --git a/man/checkOptSol-methods.Rd b/man/checkOptSol-methods.Rd
index ae86bd4..35afd4e 100644
--- a/man/checkOptSol-methods.Rd
+++ b/man/checkOptSol-methods.Rd
@@ -50,7 +50,7 @@
}
\value{
- TRUE or FALSE if \code{onlywarn} is set to TRUE, otherwisw an object of class
+ TRUE or FALSE if \code{onlywarn} is set to TRUE, otherwise an object of class
\code{\linkS4class{checksol}}.
}
--
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