From 0d2b9ea74289824906dab930afb19bb21ee3fb6c Mon Sep 17 00:00:00 2001
From: Swastik Mishra <swastik.mishra@hhu.de>
Date: Wed, 25 Dec 2024 12:35:40 +0000
Subject: [PATCH] Update readme

---
 README.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/README.md b/README.md
index a8f6acd..07b962f 100644
--- a/README.md
+++ b/README.md
@@ -2,6 +2,8 @@
 
 Code to reproduce the results of the paper, "Horizontal gene transfer rates decrease during transitions to new ecosystems".
 
+This repository is only for analyses of ecosystem transfers and associated HGT rates. For the corresponding analysis about pathogencity gains instead, see [this repo instead](https://gitlab.cs.uni-duesseldorf.de/mishra/hgt_rates_and_pathogenicity_gains)
+
 Jupyter notebooks in `notebooks` directory were run in the order of their numbering. Scripts and other helper functions that they depend on or are mentioned in the notebooks can be found in the `code` directory.
 
 Please note that using 'Run all' or equivalent in the Jupyter notebooks will generally not be useful. Some of the intervening steps in the notebooks are markdown cells instructing how to run programs via shell, separately. These programs are time consuming ones, often utilising multiprocessing in an HPC. Please run the notebooks, cell by cell, keeping this in mind. Generally speaking, if you have run the previuos cell, you can run the current cell if it's a Python cell. If it's a markdown cell instructing you to do something, do it before proceeding.
-- 
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