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XBA problem generation from SBML code metabolic/kinetic models. Support of Growth Balance Analysis (GBA), FBA and RBA
Public Jupyter teaching notebooks for use with the ProB kernel for Jupyter.
This repo contains a snowball-stemmer for the german language.
The similarity between the documents and the query is calculated with the cosine-similarity.
Reduce a metabolic network (SBML fbc coded model) as per Network Reducer method implemented in MATLAB tool CellNetAnalzyser.
ProB Modelling Examples as Jupyter Notebooks.
Prune a metabolic model (remove redundant reactions). Based on Network Reducer (Erdrich et al. 2015).
This is a short example for requesting data with neo4j-driver in a node.js project.