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Prune a metabolic model (remove redundant reactions). Based on Network Reducer (Erdrich et al. 2015).

Description: Python package sbmlxdf. Converts between SBML (.xml) and Pandas dataframes, Excel spreadsheets (.xlsx), *.csv. SBML model creation, modification, validation and access.

XBA problem generation from SBML code metabolic/kinetic models. Support of Growth Balance Analysis (GBA), FBA and RBA

Code for "Dialogue Evaluation with Offline Reinforcement Learning" paper

Reduce a metabolic network (SBML fbc coded model) as per Network Reducer method implemented in MATLAB tool CellNetAnalzyser.

Public codebase for "LAVA: Latent Action Spaces via Variational Auto-encoding for Dialogue Policy Optimization" published in COLING 2020.

This repo contains a snowball-stemmer for the german language. The similarity between the documents and the query is calculated with the cosine-similarity.